View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_12 (Length: 328)
Name: NF11018_low_12
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_12 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 42874946 - 42875263
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42874946 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42875045 |
T |
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| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
210 |
Q |
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| T |
42875046 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42875145 |
T |
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| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875146 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42875245 |
T |
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| Q |
311 |
gaataaaaatttacttac |
328 |
Q |
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|||| ||||||||||||| |
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| T |
42875246 |
gaattaaaatttacttac |
42875263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 328
Target Start/End: Original strand, 42884077 - 42884394
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884077 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42884176 |
T |
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| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
210 |
Q |
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| T |
42884177 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42884276 |
T |
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| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
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| T |
42884277 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42884376 |
T |
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| Q |
311 |
gaataaaaatttacttac |
328 |
Q |
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|||| ||||||||||||| |
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| T |
42884377 |
gaattaaaatttacttac |
42884394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 42890355 - 42890038
Alignment:
| Q |
11 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
110 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890355 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42890256 |
T |
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| Q |
111 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaatacaaatccaagtag |
210 |
Q |
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| T |
42890255 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaatacaaatccaagtag |
42890156 |
T |
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| Q |
211 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890155 |
tccaattgaagagtcctacatgaaattaacaaatcaagatcaaaattaatttttatcattgtagaatcaaacatcctccaaatgaatgtaatattgatat |
42890056 |
T |
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| Q |
311 |
gaataaaaatttacttac |
328 |
Q |
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|||| ||||||||||||| |
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| T |
42890055 |
gaattaaaatttacttac |
42890038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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