View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_13 (Length: 325)
Name: NF11018_low_13
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 5460592 - 5460916
Alignment:
| Q |
1 |
aatcgatacctgttcaatcttcttgtcacaacttacctgtctttactttatatatttctatatcatcttcgcattcctgataccatatcaaatatggtat |
100 |
Q |
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| T |
5460592 |
aatcgatacctgttcaatcttcttgtcacaacttacctgtctttactttatatatttctatatcatctttgcattcccgataccatatcaaatatggtat |
5460691 |
T |
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| Q |
101 |
gagaaagacgcttatatgttggcaatgatgaaaaccacttgcacatcattggcaagagcactcttgaaatgctccaaatcaaatgtatcggcaagttcac |
200 |
Q |
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| T |
5460692 |
gagaaagacgcttatattttggcaatgatgaaaaccacatgcacatcattggcaagagcattcttgaaatgctccaaatcaaatgtatcagcaagttcac |
5460791 |
T |
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| Q |
201 |
ttcaaaacaaaaccaatactgatagggaatcaccaagaattcgagcaatgcattaacaaagaagcatggctagtattaagatcaaaagattgaaactatc |
300 |
Q |
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| T |
5460792 |
tgcaaaacaaaaccaatactaatagggaatcaccaagaattcgagcaatgcattaacaaagaagcatggctagtattaagatcaaaagattgaaactatc |
5460891 |
T |
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| Q |
301 |
tagacctgtgcttaaagcttatgct |
325 |
Q |
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| T |
5460892 |
tatacctgtgcttaaagcttatgct |
5460916 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 7748170 - 7748086
Alignment:
| Q |
132 |
aaaccacttgcacatcattggcaagagcactcttgaaatgctccaaatcaaatgtatcggcaagttcacttcaaaacaaaaccaa |
216 |
Q |
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| T |
7748170 |
aaaccacccgcacatcattggcaagaacattcttgaagtgctcaaaatcaaatatatcagcaaattcactgcaaaacaaaaccaa |
7748086 |
T |
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