View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_14 (Length: 318)
Name: NF11018_low_14
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 44155570 - 44155881
Alignment:
| Q |
1 |
tcagataagtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactactctcaccatccacattatcct |
100 |
Q |
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| T |
44155570 |
tcagataagtgcagtttatctctatcgagtacattctcacaaatgtgtcattagccaccatcatcagtgttctcactactctcaccatccacattatcct |
44155669 |
T |
|
| Q |
101 |
ctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcatttttgcaataccaatgtccttattttgcatttgataaccagtctatac |
200 |
Q |
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| T |
44155670 |
ctaagaactttaaatagtgatcaggggttgactatctccaatacgtctccattttggcaataccaatgtccttattttgcatttgataaccagactatac |
44155769 |
T |
|
| Q |
201 |
agtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44155770 |
agtttatactcaagatttggaatgagacctgaatcaccattttttggcatcttatttgttcaatgatttatcttgacaaattcattgcaacgtgtcctat |
44155869 |
T |
|
| Q |
301 |
tttttcttctct |
312 |
Q |
| |
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|||||||||||| |
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| T |
44155870 |
tttttcttctct |
44155881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 40894247 - 40894153
Alignment:
| Q |
8 |
agtgcagttcatctctatcgagtacattctcacaaatgtgtcactatctaccatcatcagtgttctcactactctcaccatccacattatcctct |
102 |
Q |
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| T |
40894247 |
agtgcagttcatctctatcaactacattcttaccaatgtgtcattatccactattatcagtgttctcactactctcaccatccacattatcctct |
40894153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 227
Target Start/End: Original strand, 44214701 - 44214871
Alignment:
| Q |
57 |
accatcatcagtgttctcactactctcaccatccacattatcctctaagaactttaaattgtgatcaggggttgactatctccaatatgtcttcattttt |
156 |
Q |
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|||||| || |||||||||| |||||||||||| ||||||||||||||||| | || | ||||||||| |||| ||||| |||| ||| || |||| |
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| T |
44214701 |
accatcgtcggtgttctcaccactctcaccatcaacattatcctctaagaaatctagactgtgatcagatattgatagtctcctatatttctccaatttt |
44214800 |
T |
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| Q |
157 |
gcaataccaatgtccttattttgcatttgataaccagtctatacagtttatactcaagatttggaatgaga |
227 |
Q |
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| T |
44214801 |
gcaatactaatgtccatattttgaatttgttaactagtctatacagttcgtactcaagattttcaatgaga |
44214871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 44146250 - 44146193
Alignment:
| Q |
252 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctattttttcttc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44146250 |
ttatttgttcaatgatttatcttgacaaattcattgcaacgtgccctattttttcttc |
44146193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 291
Target Start/End: Complemental strand, 40894099 - 40894069
Alignment:
| Q |
261 |
caatgatttatcttgacaaattcattgcaac |
291 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
40894099 |
caatgatttatcttgacaaattcattgcaac |
40894069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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