View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11018_low_15 (Length: 304)

Name: NF11018_low_15
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11018_low_15
NF11018_low_15
[»] chr3 (11 HSPs)
chr3 (18-297)||(778067-778346)
chr3 (132-241)||(1186226-1186335)
chr3 (132-241)||(1204290-1204399)
chr3 (66-241)||(476034-476209)
chr3 (132-234)||(1304691-1304793)
chr3 (118-242)||(480945-481069)
chr3 (134-258)||(5361014-5361138)
chr3 (119-199)||(7125963-7126043)
chr3 (184-243)||(2996512-2996571)
chr3 (184-243)||(45870518-45870577)
chr3 (119-236)||(7118764-7118881)
[»] chr4 (1 HSPs)
chr4 (118-284)||(52186779-52186945)
[»] chr2 (4 HSPs)
chr2 (118-241)||(43864018-43864142)
chr2 (52-241)||(43867444-43867633)
chr2 (130-287)||(43875198-43875355)
chr2 (157-263)||(38989087-38989193)
[»] scaffold0438 (1 HSPs)
scaffold0438 (135-241)||(5312-5418)
[»] chr5 (2 HSPs)
chr5 (135-220)||(33958061-33958146)
chr5 (140-238)||(7894989-7895086)
[»] chr7 (5 HSPs)
chr7 (126-236)||(6889146-6889256)
chr7 (157-236)||(32413624-32413703)
chr7 (180-238)||(44501473-44501531)
chr7 (119-200)||(6844163-6844244)
chr7 (156-200)||(9235845-9235889)
[»] chr6 (6 HSPs)
chr6 (157-236)||(7115545-7115624)
chr6 (157-236)||(7120617-7120696)
chr6 (157-236)||(7124021-7124100)
chr6 (157-236)||(8656650-8656729)
chr6 (170-236)||(7140748-7140814)
chr6 (170-236)||(8680362-8680428)
[»] chr1 (2 HSPs)
chr1 (119-243)||(28928421-28928545)
chr1 (157-224)||(14288895-14288962)
[»] scaffold0896 (2 HSPs)
scaffold0896 (157-222)||(1471-1536)
scaffold0896 (157-222)||(2254-2319)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 778067 - 778346
Alignment:
Q  18 catacaataattgtgcggaaagtcgagaacacggatagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggtt 117  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  778067 catacaataattgcgctgaaagtcaagaacacggatagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggtt 778166  T
Q  118 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  778167 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttggactgcctctttggctttca 778266  T
Q  218 aaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtccttgcctcctatg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  778267 aaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtccttgcctcttatg 778346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 1186335 - 1186226
Alignment:
Q  132 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 231  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1186335 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1186236  T
Q  232 tgaaggagaa 241  Q
    ||| ||||||    
T  1186235 tgatggagaa 1186226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 1204399 - 1204290
Alignment:
Q  132 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 231  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1204399 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1204300  T
Q  232 tgaaggagaa 241  Q
    ||| ||||||    
T  1204299 tgatggagaa 1204290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 241
Target Start/End: Complemental strand, 476209 - 476034
Alignment:
Q  66 atcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggttctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagaga 165  Q
    |||||||||||| ||||||||||| |  ||||  || |||||   | |||| ||||||| ||||||||||| |||||| ||||| ||| | |||||||||    
T  476209 atcacgaagagagaaaatctgagacagaaattgatcgaaacttgtgcaggtcctaaagtttgaagaacttagtgtaagggtgggaagagtattccagaga 476110  T
Q  166 ttgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaa 241  Q
    ||||||||||||||||| ||||| ||||||||||| || |||||||| || ||||| || ||| ||||||||||||    
T  476109 ttgatccatcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaaggagaa 476034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 1304691 - 1304793
Alignment:
Q  132 acttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatg 231  Q
    |||||||||||||||||  ||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||||    
T  1304691 acttaatgtaagagtggaaagagtcttccagagattgatccatcttttcgataaaatgcaagtttgaactgcctctttggcattcaaaaaggagagtatg 1304790  T
Q  232 tga 234  Q
    |||    
T  1304791 tga 1304793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 481069 - 480945
Alignment:
Q  118 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttca 217  Q
    ||||||| |||||||||||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |    
T  481069 ctaaagtttgaagaacttaaggtaagcgtgggaagagtcttccagagattgatccatcttttggataaaatacaagtttgaacggcctctttggcgttta 480970  T
Q  218 aaaaagatagtatgtgaaggagaac 242  Q
    |||| || |||||| || |||||||    
T  480969 aaaaggagagtatgagatggagaac 480945  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 5361014 - 5361138
Alignment:
Q  134 ttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtg 233  Q
    |||||| |||||| || ||| | |||||||||||| ||||||||||||| |||||||||||||| |  || | |||| | || ||||| || || |||||    
T  5361014 ttaatgcaagagttggaagagtcttccagagattggtccatcttttggataaaatgcaagtttggatggcttttttgacgtttaaaaaggagagcatgtg 5361113  T
Q  234 aaggagaacatcatctgtcaagtca 258  Q
    || | |||||||||| | |||||||    
T  5361114 aacgggaacatcatcggacaagtca 5361138  T

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Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 7126043 - 7125963
Alignment:
Q  119 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaa 199  Q
    |||| ||||||||| |||||||||| || || |||  ||||||||||||  |||||||||||||||| || ||||||||||    
T  7126043 taaattgtgaagaaattaatgtaagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaa 7125963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 2996512 - 2996571
Alignment:
Q  184 aaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaaca 243  Q
    |||||||||||||||||||| ||||| |  |||||||| || ||||||||||||| ||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataaca 2996571  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 45870518 - 45870577
Alignment:
Q  184 aaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaaca 243  Q
    |||| ||||||||||||||| |||||||| ||| |||| || ||||||||||||| ||||    
T  45870518 aaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataaca 45870577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 7118881 - 7118764
Alignment:
Q  119 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaa 218  Q
    |||||||||||||| ||| |||||| ||||| |||   ||||| |||||  ||||||||||||| | |||  |||||||||| |  | |||| |||||||    
T  7118881 taaagtgtgaagaagttagtgtaagggtgggaagatgcttccatagatttttccatcttttggagagaatagaagtttgaacggtttgtttgactttcaa 7118782  T
Q  219 aaaagatagtatgtgaag 236  Q
    | | || |||||||||||    
T  7118781 agaggagagtatgtgaag 7118764  T

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Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 284
Target Start/End: Complemental strand, 52186945 - 52186779
Alignment:
Q  118 ctaaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttca 217  Q
    ||||||| ||||||||||| |||||||||||| ||| |  |||||||| ||||||||||||||||||||||||| |||||||| |||| ||| || ||||    
T  52186945 ctaaagtatgaagaacttagtgtaagagtgggaagactcctccagagaatgatccatcttttggacaaaatgcaggtttgaacggcctgttttgcgttca 52186846  T
Q  218 aaaaagatagtatgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtc 284  Q
     ||| || |||| ||| |||||||||  ||| ||||||||| ||||  ||| || ||||||||||||    
T  52186845 gaaaggagagtaggtggaggagaacagaatcagtcaagtcactgataatgtcttcatttttgttgtc 52186779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 43864018 - 43864142
Alignment:
Q  118 ctaaagtgtgaagaacttaatgtaag-agtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttc 216  Q
    ||||||| |||||||||||||||||  ||| || ||| | ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| || |||    
T  43864018 ctaaagtttgaagaacttaatgtaattagtaggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattc 43864117  T
Q  217 aaaaaagatagtatgtgaaggagaa 241  Q
    ||||| || |||||||||| |||||    
T  43864118 aaaaaggacagtatgtgaatgagaa 43864142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 43867444 - 43867633
Alignment:
Q  52 atagtgattgagccatcacgaagagacaaaatctgagaaacgaattcttcaaaactgtcggaggttctaaagtgtgaagaacttaatgtaagagtgggta 151  Q
    |||||| |||||||||| |||||||| ||||  ||||| | ||||||  | ||||| |    ||| |||||||  |||||||||||||||| ||| || |    
T  43867444 atagtggttgagccatcgcgaagagataaaaagtgagacaggaattcggctaaacttttctcggtcctaaagttcgaagaacttaatgtaatagtaggaa 43867543  T
Q  152 gaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaa 241  Q
    ||   ||||||||| |||||||||||||||||||||||||||||||| | |||||||| || |||||||| || |||| ||||| |||||    
T  43867544 gacccttccagagagtgatccatcttttggacaaaatgcaagtttgagcggcctcttttgcgttcaaaaaggacagtacgtgaatgagaa 43867633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 287
Target Start/End: Original strand, 43875198 - 43875355
Alignment:
Q  130 gaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagta 229  Q
    |||| ||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||  ||||||| || || ||||| || | ||    
T  43875198 gaacataatgtaagagtgggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacgacctcttttgcatttaaaaaggacacta 43875297  T
Q  230 tgtgaaggagaacatcatctgtcaagtcattgattgtgtgtttatttttgttgtcctt 287  Q
    |||||| ||||| |  |||  |||||| | ||||  ||| || |||||||||||||||    
T  43875298 tgtgaatgagaatacaatcgatcaagttactgataatgtcttcatttttgttgtcctt 43875355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 38989193 - 38989087
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaaggagaacatcatctgtcaagt 256  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||| |||| | | || || | ||| || |||||||||||||||||   ||| |||||||    
T  38989193 ttccagagaatgatccatcttttggacaaaacgcatgtttgaacagcctgtattgcgtttagaaaggacagtatgtgaaggagaaccgaatcggtcaagt 38989094  T
Q  257 cattgat 263  Q
    || ||||    
T  38989093 cactgat 38989087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 5418 - 5312
Alignment:
Q  135 taatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtga 234  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||| |||||||| |||||| | |  |||||||| || |||||||||    
T  5418 taatgtaagagtgggaagagtcttccagagattgatccatcttttggataaaatgcatgtttgaacggcctctcttgtgttcaaaaaggacagtatgtga 5319  T
Q  235 aggagaa 241  Q
    | |||||    
T  5318 atgagaa 5312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 220
Target Start/End: Original strand, 33958061 - 33958146
Alignment:
Q  135 taatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaa 220  Q
    ||||||||||||| | ||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||| |||  |||||||    
T  33958061 taatgtaagagtgtgaagagtcttccagagattgatccatcttttggataaaatgcaagtttgaacggcctctctggtgttcaaaa 33958146  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 238
Target Start/End: Complemental strand, 7895086 - 7894989
Alignment:
Q  140 taagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaagga 238  Q
    |||||| |||||||| ||||||||||||  |||||||  | ||||||||||||| |||||| || | |||||| |||||||| || || ||||||||||    
T  7895086 taagagcgggtagaagtttccagagattcttccatctgatagacaaaatgcaag-ttgaacggcttgtttggcattcaaaaaggaaagaatgtgaagga 7894989  T

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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 6889256 - 6889146
Alignment:
Q  126 tgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagat 225  Q
    ||||||||||||| |||| || || |||  ||||||||||||| ||||||||||||| | ||||||||||||||| || ||| |||  | |||||||||     
T  6889256 tgaagaacttaatataagggtaggaagatatttccagagattgttccatcttttggatagaatgcaagtttgaacagcgtctatggtgtccaaaaaagag 6889157  T
Q  226 agtatgtgaag 236  Q
    |||||||||||    
T  6889156 agtatgtgaag 6889146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 32413703 - 32413624
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    |||||||||||  |||||||| |||||||||||||||||||||| || | |||||  |||||| | || |||||||||||    
T  32413703 ttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 44501473 - 44501531
Alignment:
Q  180 ggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaagga 238  Q
    ||||||||||||||| ||||| || | |||||| ||||||||||| |||||||||||||    
T  44501473 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 44501531  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 6844244 - 6844163
Alignment:
Q  119 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaac 200  Q
    ||||||||||||   | ||| |||||||||| |||  |||||| |||||| ||||||||||||| | |||||||||||||||    
T  6844244 taaagtgtgaagtcttcaatataagagtgggaagatgtttccaaagattgttccatcttttggatagaatgcaagtttgaac 6844163  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 9235845 - 9235889
Alignment:
Q  156 tttccagagattgatccatcttttggacaaaatgcaagtttgaac 200  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||    
T  9235845 tttccaaagattgttccatcttttggagagaatgcaagtttgaac 9235889  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 7115545 - 7115624
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7115545 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 7120617 - 7120696
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7120617 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 7124021 - 7124100
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    |||||||||||  ||||||||||||||||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  7124021 ttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 8656650 - 8656729
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  ||||||||||| |||||||||||    
T  8656650 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 8656729  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 7140748 - 7140814
Alignment:
Q  170 tccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    ||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||| |||||||||||    
T  7140748 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 8680362 - 8680428
Alignment:
Q  170 tccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaagatagtatgtgaag 236  Q
    ||||||||||||||||||| |||||||||||||| | ||| |  ||||||||||| |||||||||||    
T  8680362 tccatcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 28928421 - 28928545
Alignment:
Q  119 taaagtgtgaagaacttaatgtaagagtgggtagaattttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaa 218  Q
    |||| ||||| | |||||||||||| ||||| |||   |||||||||||  ||||||   |||| |  |||||||||||||| || ||||||||||| ||    
T  28928421 taaaatgtgagggacttaatgtaagggtgggaagacgcttccagagattcttccatcgagtggagagtatgcaagtttgaacagcttctttggcttttaa 28928520  T
Q  219 aaaagatagtatgtgaaggagaaca 243  Q
    |||||||| ||||||||| ||||||    
T  28928521 aaaagataatatgtgaagtagaaca 28928545  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Original strand, 14288895 - 14288962
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaaga 224  Q
    |||||||||||  ||||||||||||| |  |||||||||||||| || | ||||| ||||||||||||    
T  14288895 ttccagagattcttccatcttttggagagtatgcaagtttgaacggcgtatttggttttcaaaaaaga 14288962  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 1536 - 1471
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaa 222  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  |||||||||    
T  1536 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaa 1471  T

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Target: scaffold0896; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 2319 - 2254
Alignment:
Q  157 ttccagagattgatccatcttttggacaaaatgcaagtttgaactgcctctttggctttcaaaaaa 222  Q
    |||||||||||  |||||||||||| |||||  |||||||||||||| | |||||  |||||||||    
T  2319 ttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaa 2254  T

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