View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11018_low_16 (Length: 302)

Name: NF11018_low_16
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11018_low_16
NF11018_low_16
[»] chr4 (1 HSPs)
chr4 (1-291)||(48412119-48412409)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 48412119 - 48412409
Alignment:
Q  1 tgaacactcaattttcttcttcttttttgcagacccattaagttcttcttctgaaaattccttgttggacataccaacgagtgattcaatgaaagaacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48412119 tgaacactcaattttcttcttcttttttgcagacccattaagttcttcttctgaaaattccttgttggacataccaacgagtgattcaatgaaagaacgg 48412218  T
Q  101 tccgaatcatcatcgcctttataagcatctttcatgggaataggacccaaattttgaacaaaatcgttaattttttgaggggaattgcgagtgagagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48412219 tccgaatcatcatcgcctttataagcatctttcatgggaataggacccaaattttgaacaaaatcgttaattttttgaggggaattgcgagtgagagtgc 48412318  T
Q  201 tagaatcagagcctttggaatctggtggaatacctctggttcgaagtgagcgtctgataacaattggggtttcggttttgggttttttctc 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48412319 tagaatcagagcctttggaatctggtggaatacctctggttcgaagtgagcgtctgataacaattggggtttcggttttgggttttttctc 48412409  T

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