View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_19 (Length: 255)
Name: NF11018_low_19
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_19 |
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| [»] scaffold0374 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 42875280 - 42875512
Alignment:
| Q |
5 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875280 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42875379 |
T |
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| Q |
105 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42875380 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42875479 |
T |
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| Q |
205 |
ttcttgcatgtgaagtcaggggctgatcccatt |
237 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
42875480 |
ttcttacatgtgaagtcaggggctgatcccatt |
42875512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 42884411 - 42884643
Alignment:
| Q |
5 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884411 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42884510 |
T |
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| Q |
105 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
204 |
Q |
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| T |
42884511 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42884610 |
T |
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| Q |
205 |
ttcttgcatgtgaagtcaggggctgatcccatt |
237 |
Q |
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| T |
42884611 |
ttcttacatgtgaagtcaggggctgatcccatt |
42884643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 237
Target Start/End: Complemental strand, 42890021 - 42889789
Alignment:
| Q |
5 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890021 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctagtgacaagaccaagttcaattgcttcttt |
42889922 |
T |
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| Q |
105 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42889921 |
caaagcttcaccaagagcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgtgtct |
42889822 |
T |
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| Q |
205 |
ttcttgcatgtgaagtcaggggctgatcccatt |
237 |
Q |
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| T |
42889821 |
ttcttacatgtgaagtcaggggctgatcccatt |
42889789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 37505483 - 37505662
Alignment:
| Q |
24 |
aggatgattttcagtaacccaaagtttagaagtaacaaaaaggtcttgtctag-tgaca--agaccaagttcaattgcttctttcaaagcttcaccaaga |
120 |
Q |
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||||||||| ||||||||||| | ||||||||||||||| || || | ||||| ||| | || ||||||| || ||||||| | |||||| |||| | |
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| T |
37505483 |
aggatgattatcagtaacccataatttagaagtaacaaagagttcatctctagatgaaataagtccaagtttaagtgcttctgcaatagcttctccaaca |
37505582 |
T |
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| Q |
121 |
gcttgttctgagccatatgcagcagcagtatcaaagtgtctataaccttgtttgatggcttcaatgattgcatcttttgt |
200 |
Q |
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| T |
37505583 |
gatttttccacaccatatgcagcagcagcatcaaaatgtctataaccttgtttgatggcttcaaggacagcatcttttgt |
37505662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0374 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0374
Description:
Target: scaffold0374; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 13264 - 13216
Alignment:
| Q |
5 |
gagcaggaataacaagatgaggatgattttcagtaacccaaagtttaga |
53 |
Q |
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| T |
13264 |
gagcaggaagaacaagatgaggaaaattatcagtaacccaaagtttaga |
13216 |
T |
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