View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11018_low_26 (Length: 215)

Name: NF11018_low_26
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11018_low_26
NF11018_low_26
[»] chr7 (9 HSPs)
chr7 (12-183)||(28549822-28549993)
chr7 (39-186)||(28545434-28545581)
chr7 (100-182)||(28556078-28556160)
chr7 (101-182)||(48253855-48253936)
chr7 (102-182)||(47958503-47958583)
chr7 (99-182)||(24142889-24142972)
chr7 (109-174)||(42617411-42617475)
chr7 (108-173)||(2415882-2415947)
chr7 (129-174)||(46961385-46961430)
[»] chr3 (4 HSPs)
chr3 (70-182)||(21127734-21127846)
chr3 (99-182)||(43291863-43291946)
chr3 (109-174)||(42085063-42085127)
chr3 (100-164)||(21126541-21126604)
[»] chr1 (7 HSPs)
chr1 (97-182)||(39959838-39959923)
chr1 (101-183)||(2736174-2736256)
chr1 (101-185)||(1076189-1076273)
chr1 (109-174)||(5298760-5298824)
chr1 (109-174)||(25948209-25948273)
chr1 (109-174)||(47490286-47490350)
chr1 (102-182)||(1093781-1093861)
[»] chr2 (1 HSPs)
chr2 (99-182)||(36011884-36011967)
[»] chr4 (4 HSPs)
chr4 (102-183)||(33075797-33075878)
chr4 (102-160)||(42678854-42678912)
chr4 (109-174)||(43930118-43930182)
chr4 (108-173)||(55899070-55899135)
[»] scaffold0648 (1 HSPs)
scaffold0648 (109-174)||(7753-7817)
[»] chr8 (1 HSPs)
chr8 (109-174)||(33802591-33802655)
[»] chr5 (2 HSPs)
chr5 (109-174)||(12974260-12974324)
chr5 (109-174)||(40579690-40579754)
[»] chr6 (1 HSPs)
chr6 (108-173)||(30809870-30809935)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 8e-88; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 28549822 - 28549993
Alignment:
Q  12 ataaattaggttttcttcaaaagctataaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattagatcaacaagttgatatgg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28549822 ataaattaggttttcttcaaaagctataaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattaaatcaacaagttgatatgg 28549921  T
Q  112 ccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28549922 ccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaa 28549993  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 39 - 186
Target Start/End: Original strand, 28545434 - 28545581
Alignment:
Q  39 aaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattagatcaacaagttgatatggccgagttggtctaaggcgccagattaa 138  Q
    ||||||||||||||| || ||||||||| ||||||||| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||||||    
T  28545434 aaaattcattttaacgaacatgttagttatatttatacttgtaacgcgaaactataacaaaaagttgatatggccgagttggtctaaggcgccagattaa 28545533  T
Q  139 ggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaattc 186  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  28545534 ggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaattc 28545581  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 28556078 - 28556160
Alignment:
Q  100 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28556078 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 28556160  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 48253855 - 48253936
Alignment:
Q  101 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  48253855 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 48253936  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 47958583 - 47958503
Alignment:
Q  102 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  47958583 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 47958503  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 24142972 - 24142889
Alignment:
Q  99 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||    
T  24142972 caagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccactctcaaca 24142889  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 42617475 - 42617411
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  42617475 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42617411  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 2415882 - 2415947
Alignment:
Q  108 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 173  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  2415882 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 2415947  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 46961385 - 46961430
Alignment:
Q  129 gccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||    
T  46961385 gccagattaaggttctggtctgaaaaggcgtgggttcaaatcccac 46961430  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 21127846 - 21127734
Alignment:
Q  70 tttatacatgtgacgcgaaattagatcaacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaat 169  Q
    |||||| |||| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21127846 tttatatatgtaacgcgaaatcataacaataagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaat 21127747  T
Q  170 cccactgtcaaca 182  Q
    |||||||||||||    
T  21127746 cccactgtcaaca 21127734  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 43291946 - 43291863
Alignment:
Q  99 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43291946 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 43291863  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 42085127 - 42085063
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  42085127 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42085063  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 21126604 - 21126541
Alignment:
Q  100 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtt 164  Q
    ||||||| ||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |||||||    
T  21126604 aagttgagatgaccgagttggcctaaggcaccggattaaggttctgatcc-aaagggagtgggtt 21126541  T

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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 39959838 - 39959923
Alignment:
Q  97 aacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39959838 aacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 39959923  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 2736174 - 2736256
Alignment:
Q  101 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 183  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  2736174 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaa 2736256  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 1076189 - 1076273
Alignment:
Q  101 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaatt 185  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  1076189 agttgagatggccgagttggtctaaggcgtcagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaatt 1076273  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 5298760 - 5298824
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  5298760 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 5298824  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 25948209 - 25948273
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  25948209 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 25948273  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 47490350 - 47490286
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  47490350 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 47490286  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 1093781 - 1093861
Alignment:
Q  102 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||  || ||| ||||||| ||||||| || ||||||    
T  1093781 gttgagatggccgagttggtctaaggcgcccgattaaggttctggtctaaatgggtgtgggttcaaatcccgctctcaaca 1093861  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 36011884 - 36011967
Alignment:
Q  99 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 182  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  36011884 caagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 36011967  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 33075797 - 33075878
Alignment:
Q  102 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 183  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  33075797 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaa 33075878  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 42678912 - 42678854
Alignment:
Q  102 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtg 160  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  42678912 gttgagatggccgagttagtctaaggcgccagattaaggttctcgtccgaaagggcgtg 42678854  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 43930182 - 43930118
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  43930182 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 43930118  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 55899135 - 55899070
Alignment:
Q  108 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 173  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  55899135 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

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Target: scaffold0648 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 7817 - 7753
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  7817 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 7753  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Complemental strand, 33802655 - 33802591
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  33802655 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 33802591  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 12974260 - 12974324
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  12974260 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 12974324  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 40579690 - 40579754
Alignment:
Q  109 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 174  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  40579690 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 40579754  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 30809935 - 30809870
Alignment:
Q  108 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 173  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  30809935 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

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