View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11018_low_4 (Length: 523)
Name: NF11018_low_4
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 523
Target Start/End: Original strand, 45404488 - 45404993
Alignment:
| Q |
18 |
gagaaaccctttgatggaaactccagttttgatcatcttgaatcctttttcagtatccaaaatctctaaacttttccctttgaacttgaaattcttggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404488 |
gagaaaccctttgatggaaactccagttttgatcatcttgaatcctttttcagtatccaaaatctctaaacttttccctttgaacttgaaattcttggaa |
45404587 |
T |
|
| Q |
118 |
acagaattgcctaattcatacttcttgttctcactttgcttcatcaactttgcaatattagcatcaaatttagtaacaagattagttcgaacggaagatc |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404588 |
acagaattgcctaactcatacttcttgttctcactttgcttcatcaactttgcaatattagcatcaaatttagtaacaagattagttcgaacggaagatc |
45404687 |
T |
|
| Q |
218 |
gagcttcaaagtaaacagaattattatcagaggattcagcagcaagaaaatgaagaccactccaaggactaacatctctactaagcataatcaagctcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404688 |
gagcttcaaagtaaacagaattattatcagaggattcagcagcaagataatgaagaccactccaaggactaacatctctactaagcataatcaagctcat |
45404787 |
T |
|
| Q |
318 |
agcaacttcttcttgctcatgttcaacctcagaaacagaagaagaagctgttgcagtagctaccatgttataccttgttcttgttctctttgatcttttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404788 |
agcaacttcttcttgctcatgttcaacctcagaaacagaagaagaagctgttgcagtagctaccatgttataccttgttcttgttctctttgatcttttc |
45404887 |
T |
|
| Q |
418 |
ttcctatttggagcagtgatttcattatcagattgaacatctttagcattattagtccatgaatcttgatcttccaagctgttagaaactctttctttct |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45404888 |
ttcctatttggagcagtgatttcattatcagattgaacatctttagcatcattagtccatgaatcttgatcttccaagctgttagaaactctttctttct |
45404987 |
T |
|
| Q |
518 |
ctgaat |
523 |
Q |
| |
|
|||||| |
|
|
| T |
45404988 |
ctgaat |
45404993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 7234334 - 7234387
Alignment:
| Q |
279 |
ccaaggactaacatctctactaagcataatcaagctcatagcaacttcttcttg |
332 |
Q |
| |
|
|||||| || ||||||||||||||||| ||||| ||||||||||| |||||||| |
|
|
| T |
7234334 |
ccaaggtcttacatctctactaagcattatcaaactcatagcaacctcttcttg |
7234387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University