View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11018_low_9 (Length: 377)
Name: NF11018_low_9
Description: NF11018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11018_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 7043533 - 7043190
Alignment:
| Q |
14 |
aggtatttattttattagataagctcaagcaagccaattaaatacaaaaatggcttgaaaggtaaactctctcacttataaacacttcattggattcgaa |
113 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |
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| T |
7043533 |
aggtatttatctcattagataagctcaagcaagccaattaaatacaaaaatggcttgtaacgtaaactctctcacttataaacacttcattggatttgaa |
7043434 |
T |
|
| Q |
114 |
ttaaatattgtagttctatgaagttcaacaatctcataaaatcaactaaaaattcattaatacaaaagaactatacctgtttggctttctttcctgttcc |
213 |
Q |
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|||||||||||| || ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
7043433 |
ttaaatattgtaattttatcatgttcaacaatctcataaaatcaactaaaaattcattaatacagaagaattatacctgtttggctttctttccagttcc |
7043334 |
T |
|
| Q |
214 |
tgctactacgaacaatgcaatcctgataattaattggnnnnnnnntcagccaaacatcaatgaataannnnnnnnaggggcttagggttataggaagatg |
313 |
Q |
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| T |
7043333 |
tgctactacgaacaatgtaatcctgataattaattggaaaaaaaatcagccaaacatcaatgaataa-tttttttaggggtttagggttatgggaagatg |
7043235 |
T |
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| Q |
314 |
aagaagagaatgaagttacctacctgcatcaagagatagagagaa |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7043234 |
aagaagagaatgaagttacctacctgcatcaagagatagagagaa |
7043190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 358
Target Start/End: Complemental strand, 7033106 - 7032762
Alignment:
| Q |
14 |
aggtatttattttattagataagctcaagcaagccaattaaatacaaaaatggcttgaaaggtaaactctctcacttataaacacttcattggattcgaa |
113 |
Q |
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| T |
7033106 |
aggtatttatctcattagataagctcatgcaagccaattaaatacaaaaatggcttgtaagggaaactctctcacttataaacacttcattggattcgaa |
7033007 |
T |
|
| Q |
114 |
ttaaatattgtagttctatgaagttcaacaatctcataaaatcaactaaaaattcattaatacaaaagaactatacctgtttggctttctttcctgttcc |
213 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
7033006 |
ttaaatattgtagttctatcaagttcaacaatctcataaaatcaactaaaaattcattaatacaaaagaattatacctgtttggcattctttccaattcc |
7032907 |
T |
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| Q |
214 |
tgctactacgaacaatgcaatcctgataattaattggnnnnnnnntcagccaaacatcaatgaataannnnnnnnaggggcttagggttataggaagatg |
313 |
Q |
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| T |
7032906 |
tactactacgaacaatgcaatcctgataattaattgaaaaaaaaatcagccaaacatcaatgaatatttttttttaggggtttagggttatgggaagatg |
7032807 |
T |
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| Q |
314 |
aagaagagaatgaagttacctacctgcatcaagagatagagagaa |
358 |
Q |
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| T |
7032806 |
aagaagagaatgaagttatctccctgcatcaagagatagagagaa |
7032762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 358
Target Start/End: Complemental strand, 7035371 - 7035027
Alignment:
| Q |
16 |
gtatttattttattagataagctcaagcaagccaattaaatacaaaaatggcttgaaaggtaaactctctcacttata--aacacttcattggattcgaa |
113 |
Q |
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|||||||| | ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||| ||||||| ||||||||| || |
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| T |
7035371 |
gtatttatctcattagataagctcaaataagccaattaaatacaaaaatggcttgtaaggtaagctcccttgcttatataaacacttgattggattccaa |
7035272 |
T |
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| Q |
114 |
ttaaatattgtagttctatgaagttcaacaatctcataaaatcaactaaaaattcattaatacaaaagaactatacctgtttggctttctttcctgttcc |
213 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| ||||| |
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| T |
7035271 |
ttaaatactgtagttctatgaagttcaacaatctcataaaatcaactaaaaattcattactacaaaagaattatacctgtttggcattctttccagttcc |
7035172 |
T |
|
| Q |
214 |
tgctactacgaacaatgcaatcctgataattaattggnnnnnnnntcagccaaacatcaatgaataannnnnnnnaggggcttagggttataggaagatg |
313 |
Q |
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|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||| |
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| T |
7035171 |
tgttactacgaacaatgcaatcctgataattaattggaaaaaaaatcagccaaacatcaatgaatattttttgttaggggtttagggttatgggaagatg |
7035072 |
T |
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| Q |
314 |
aagaagagaatgaagttacctacctgcatcaagagatagagagaa |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035071 |
aagaagagaatgaagttacctacctgcatcaagagatagagagaa |
7035027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 289 - 358
Target Start/End: Complemental strand, 7029883 - 7029814
Alignment:
| Q |
289 |
aggggcttagggttataggaagatgaagaagagaatgaagttacctacctgcatcaagagatagagagaa |
358 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7029883 |
aggggtttagggttatgggaagatgaagaagagaatgaagttacctacctgcatcaagagatagagagaa |
7029814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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