View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11019_high_3 (Length: 361)
Name: NF11019_high_3
Description: NF11019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11019_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 5 - 351
Target Start/End: Complemental strand, 4961335 - 4960985
Alignment:
| Q |
5 |
gagttaagtcactctaagatagaacatacacgagttaagtcacgctcggactcaatacttttaacgtgaattaactcagaaggacttaactcactcggat |
104 |
Q |
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| T |
4961335 |
gagttaagtcactctaagatagaacatgtatgagttaagtcacgctcggactcaatacttttaacgtgagttaactcagaataaattaactcactcggat |
4961236 |
T |
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| Q |
105 |
tataatccagaatgacttaatttacaccgggtataacacgtttaagtcacgctgaaggtattggatcaattatagcccatgtacgaatacggaaactggc |
204 |
Q |
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| T |
4961235 |
tataatctagagtgacttaacttacatcggatataacacgtttaagtcaagccgaaggtattggatcaattatagcccatgtacgaatacggaaactggc |
4961136 |
T |
|
| Q |
205 |
aggaatatgata----ggaacctgcaacgtcaattttttccatctacatgtgttttcttcgctgattagtcggtgtatgtcttggattggcatttcaagt |
300 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
4961135 |
aggaatatgatagtacggaacctgcaccgtcaattttttccatctacatgtgttttcttcgttgattagtcagtgtatgtcttggattggcatttcaagt |
4961036 |
T |
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| Q |
301 |
acaaattgtccattctgatatacatctatgtgtttggatcttgctcctttg |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4961035 |
acaaattgtccattctgatatacatctatgtgtttggatcttgctcctttg |
4960985 |
T |
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