View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11019_high_4 (Length: 361)

Name: NF11019_high_4
Description: NF11019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11019_high_4
NF11019_high_4
[»] chr1 (4 HSPs)
chr1 (7-231)||(39091652-39091876)
chr1 (251-348)||(13882297-13882394)
chr1 (251-348)||(51658723-51658820)
chr1 (274-340)||(15541314-15541380)
[»] scaffold0003 (1 HSPs)
scaffold0003 (251-348)||(130752-130849)
[»] chr6 (4 HSPs)
chr6 (251-348)||(14989436-14989533)
chr6 (251-348)||(14980324-14980421)
chr6 (275-347)||(8403933-8404005)
chr6 (268-338)||(10906902-10906972)
[»] scaffold0218 (1 HSPs)
scaffold0218 (251-348)||(14334-14431)
[»] chr8 (2 HSPs)
chr8 (251-348)||(23658483-23658580)
chr8 (251-348)||(23657708-23657805)
[»] chr7 (5 HSPs)
chr7 (251-348)||(16060469-16060566)
chr7 (251-348)||(48376744-48376841)
chr7 (268-348)||(9080295-9080375)
chr7 (251-348)||(4531811-4531908)
chr7 (273-348)||(37946032-37946107)
[»] scaffold0091 (1 HSPs)
scaffold0091 (251-348)||(29014-29111)
[»] chr3 (9 HSPs)
chr3 (251-348)||(4712861-4712958)
chr3 (251-348)||(16642254-16642351)
chr3 (251-348)||(14062839-14062936)
chr3 (251-348)||(14055098-14055195)
chr3 (256-348)||(13926915-13927007)
chr3 (275-340)||(16362673-16362741)
chr3 (292-347)||(22159695-22159750)
chr3 (303-340)||(21975150-21975187)
chr3 (303-340)||(21997581-21997618)
[»] scaffold0063 (1 HSPs)
scaffold0063 (267-348)||(28342-28423)
[»] chr4 (2 HSPs)
chr4 (275-347)||(15872982-15873054)
chr4 (275-348)||(12228926-12228999)
[»] scaffold0737 (1 HSPs)
scaffold0737 (262-340)||(3737-3815)
[»] scaffold0385 (1 HSPs)
scaffold0385 (275-340)||(14128-14193)
[»] chr2 (2 HSPs)
chr2 (256-340)||(23656527-23656611)
chr2 (275-340)||(16858786-16858851)
[»] scaffold1269 (1 HSPs)
scaffold1269 (251-282)||(1-32)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 39091876 - 39091652
Alignment:
Q  7 agaagcagagaagttgtgtcacatgaacatgatgtgaatcccatatgtttattaccattatcaatcttacaattacattaacagaagaaatataaactaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39091876 agaagcagagaagttgtgtcacatgaacatgatgtgaatcccatatgtttattaccattatcaatcttacaattacattaacagaagaaatataaactaa 39091777  T
Q  107 tgtcctacattaatcgtaacatagacnnnnnnnngtacacagtacattatttgattgtcattgatgaatcaatataatatgttctgtctttggatatgac 206  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39091776 tgtcctacattaatcgtaacatagacaaaaaaaagtacacagtacattatttgattgtcattgatgaatcaatataatatgttctgtctttggatatgac 39091677  T
Q  207 caaaccccacacaatcagtggaaac 231  Q
    |||||||||||||||||||||||||    
T  39091676 caaaccccacacaatcagtggaaac 39091652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 13882297 - 13882394
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882297 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 13882394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 51658723 - 51658820
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51658723 gtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgaggatgacaataactatatcagtatgatgatgagagtaatgatgt 51658820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 15541380 - 15541314
Alignment:
Q  274 aatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagt 340  Q
    ||||||||||||||||| |||||||  ||||| ||||||||||||| |  | |||||||||||||||    
T  15541380 aatgataatgtttatattttagtgattatgagaatgacgataactacactattatgatgatgagagt 15541314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 130849 - 130752
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  130849 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 130752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 14989436 - 14989533
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14989436 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 14989533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 14980324 - 14980421
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  14980324 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatggtgatgacgataactatatcagtatgatgatgatagtaatgatgt 14980421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 8403933 - 8404005
Alignment:
Q  275 atgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatg 347  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  8403933 atgataatgtttatattttagtgatgatgaggatgacgataactatatcattatgatgatgagagtgatgatg 8404005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 10906902 - 10906972
Alignment:
Q  268 atgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgaga 338  Q
    ||||||||||||||||||||||| ||||||| |||||| |||  || |||||||||| |||||||| ||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgagaatgttgagaactatatcattatgatgaggaga 10906972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 14431 - 14334
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14431 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgatgatgacgataactatatcagtatgatgatgagagtaatgatgt 14334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 23658580 - 23658483
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23658580 gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 23658483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 23657805 - 23657708
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23657805 gtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgaggatgacgataactatattagtatgatgatgagagtaatgatgt 23657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 16060566 - 16060469
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060566 gtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 16060469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 48376841 - 48376744
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48376841 gtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgaggatgacgataactatttcagtatgatgatgagagtaatgatgt 48376744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 9080375 - 9080295
Alignment:
Q  268 atgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactatatcagtatgatgataagagtaatgatgt 9080295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 4531811 - 4531908
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||| ||||||||||| ||||||||| |||||| |||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||| |||||||    
T  4531811 gtaaataaataaatacaatgagaaataataatgcttatattttattgatgatgaggatgacgacaactatatcattatgatgatgagagtgatgatgt 4531908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 37946032 - 37946107
Alignment:
Q  273 aaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||| ||||||| |||||| |||||||||| ||||  | ||||||||||||||| |||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgagaatgacgataattatactaatatgatgatgagagtgatgatgt 37946107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 29111 - 29014
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29111 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgaggatgacgataactacatcagtatgatgaggagagtaatgatgt 29014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 4712861 - 4712958
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  4712861 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatggtgatgacgataactatatcagtatgatgatgatagtaatgatgt 4712958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 251 - 348
Target Start/End: Complemental strand, 16642351 - 16642254
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||| |||||||||||||    
T  16642351 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatcaggatgaggataactatattagtatgatgataagagtaatgatgt 16642254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 14062839 - 14062936
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| | ||||||||||| || ||||||||||    
T  14062839 gtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgaggatgaggataactattttagtatgatgataagggtaatgatgt 14062936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 14055098 - 14055195
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    |||||||||| ||| ||||| |||||||||||||    
T  14055098 gtaattaaataaatacgatgagaaatgataatgtttatatgttagtgataatgaggatgagtgcaactatatcaatatcatgataagagtaatgatgt 14055195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 348
Target Start/End: Original strand, 13926915 - 13927007
Alignment:
Q  256 taaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || || |||||||| |||||||||| |||| |||||||||| |||||||    
T  13926915 taaataaatacgatgagaaatgataatgtttatattttagtgatgacgaagatgacgacaactatatcattatggtgatgagagtgatgatgt 13927007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 16362673 - 16362741
Alignment:
Q  275 atgataatgtttatatgttagtgacgatg---aggatgacgataactatatcagtatgatgatgagagt 340  Q
    |||||||||||||||| ||||||| ||||   ||||||||||||||||||||| |||||||||||||||    
T  16362673 atgataatgtttatattttagtgatgatgatgaggatgacgataactatatcattatgatgatgagagt 16362741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 22159750 - 22159695
Alignment:
Q  292 ttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatg 347  Q
    ||||||| |||||||||||| |||||||||||| ||||||| ||||||| ||||||    
T  22159750 ttagtgatgatgaggatgacaataactatatcaatatgatgttgagagtgatgatg 22159695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 21975187 - 21975150
Alignment:
Q  303 gaggatgacgataactatatcagtatgatgatgagagt 340  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  21975187 gaggatgacaataactatatcaatatgatgatgagagt 21975150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 21997618 - 21997581
Alignment:
Q  303 gaggatgacgataactatatcagtatgatgatgagagt 340  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  21997618 gaggatgacaataactatatcaatatgatgatgagagt 21997581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 28342 - 28423
Alignment:
Q  267 gatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgaggatgatgataactatatcagtatgatgatgagagtaatgatgt 28423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 15872982 - 15873054
Alignment:
Q  275 atgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatg 347  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  15872982 atgataatgtttatattttagtgatgatgaggatgacgataactatatcattatgatgatgagagtgatgatg 15873054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 275 - 348
Target Start/End: Complemental strand, 12228999 - 12228926
Alignment:
Q  275 atgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagtaatgatgt 348  Q
    |||||||| ||||||| ||||||| |||||||||||||  |||||||||| ||||| | ||||||| |||||||    
T  12228999 atgataatatttatattttagtgatgatgaggatgacggcaactatatcattatgacggtgagagtgatgatgt 12228926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 262 - 340
Target Start/End: Original strand, 3737 - 3815
Alignment:
Q  262 aatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagt 340  Q
    ||||||||||||||||||||||||  ||| ||||||| || |||| ||||||||||||||||| |||||||||||||||    
T  3737 aatacgatgagaaatgataatgttattattttagtgatgaggagggtgacgataactatatcattatgatgatgagagt 3815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 14193 - 14128
Alignment:
Q  275 atgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagt 340  Q
    |||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||    
T  14193 atgataatgtttatattttagtgatgatgaggatgacaataactatatcattatgatgatgagagt 14128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 23656527 - 23656611
Alignment:
Q  256 taaataaatacgatgagaaatgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagt 340  Q
    ||||||||||| ||||||||||||||| ||||||| ||| |||  |||||||||||| |||||||||||  |||| |||||||||    
T  23656527 taaataaatacaatgagaaatgataatatttatattttaatgataatgaggatgacgctaactatatcatgatgaagatgagagt 23656611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 16858851 - 16858786
Alignment:
Q  275 atgataatgtttatatgttagtgacgatgaggatgacgataactatatcagtatgatgatgagagt 340  Q
    |||||||||||||||  ||||||| |||||| |||||||||||||||  | ||| |||||||||||    
T  16858851 atgataatgtttatactttagtgatgatgagaatgacgataactatactattataatgatgagagt 16858786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 282
Target Start/End: Complemental strand, 32 - 1
Alignment:
Q  251 gtaattaaataaatacgatgagaaatgataat 282  Q
    ||||||||||||||||||||||||||||||||    
T  32 gtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University