View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11019_low_11 (Length: 216)
Name: NF11019_low_11
Description: NF11019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11019_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 203
Target Start/End: Complemental strand, 29107207 - 29107018
Alignment:
| Q |
14 |
acaacaactccacaaacacatccacaacaactaagaccatgtcttcttctaacaacaaatcattcaaacaccttcttaacaggagctgtaaaacatcctc |
113 |
Q |
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| T |
29107207 |
acaacaactccacaaacacatccacaacaactaagaccatgtcttcttcgaacaacaaatcattcaaacaccttcttaacaggagctgtaaaacaacgtc |
29107108 |
T |
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| Q |
114 |
ttcggaaaacggttctctgaatcttccattgttgaaagacactgaaaatgaatcactctcgatctcatctcgtttatcactttcttcttc |
203 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29107107 |
ttcagaaaacggttctctgaatcttccattgttgaaagacactgaaaatgaatcactctcgatctcatctcgtttatcactttcttcttc |
29107018 |
T |
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