View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11019_low_2 (Length: 500)
Name: NF11019_low_2
Description: NF11019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11019_low_2 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 482; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 3429740 - 3429251
Alignment:
| Q |
11 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3429740 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcataagagatctcaagaaaagattcgacatttctg |
3429641 |
T |
|
| Q |
111 |
atgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgtat |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429640 |
atgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgtat |
3429541 |
T |
|
| Q |
211 |
ccaaattatgcatttaatttgtaaatttggaagaagtgttagacttcctgcttatggtgtaatggagtttcatgttacataagttgaatggtgcaacggt |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3429540 |
ccaaattatgcatttaatttgtaaatttggaagaagtgttagacttcctgcttatggtgtaatggagtttcatgttacataagttgaatggtgcgacggt |
3429441 |
T |
|
| Q |
311 |
gtttcatgttactcatgtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaacctccaggtggttcaaacgcaa |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429440 |
gtttcatgttactcatgtgtcaattatgcatttaatttgtaaacatgaaacaccattgtaccattcaacttatgtaaacctccaggtggttcaaacgcaa |
3429341 |
T |
|
| Q |
411 |
gagttaaatgggtcctctaggctctaagcatggaaggagtgttagacttgacagagacttgagcctaaattgtggaaaacaaagatgtaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3429340 |
gagttaaatgggtcctctaggctctaagcatggaaggagtgttagacttgacagagacttgagcctaaattgtggaaaacaaagatgtaa |
3429251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 3391203 - 3391386
Alignment:
| Q |
11 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctg |
110 |
Q |
| |
|
||||||||||||| ||||| |||||| ||| |||||||| ||||||| ||||||||||||||| ||||||||||||| || ||| ||| || | || |
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| T |
3391203 |
gaacctgtgataagctcttcccaagaatattgatgactat----gtggcaatttcccattccaatcaaaagagatctcaaggaatgatccgaaatgtgtg |
3391298 |
T |
|
| Q |
111 |
atgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
198 |
Q |
| |
|
||||||||||| |||| |||||| ||||| | |||||| ||||| || |||||| ||||| |||||||| || ||||| |||||||| |
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| T |
3391299 |
atgcatgtgatattcccaattcagtaagaccggcatcatatagatcatcaagaaatcttctgaattcttgtttcagttgaatctctga |
3391386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 3315355 - 3315209
Alignment:
| Q |
52 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacat |
151 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||| |||||| | | |||| |||| ||||||||||||| |||||| ||||| |||||||| || |
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|
| T |
3315355 |
tatgtggcaacttccgattccaaacaaaagagatctcaaggaaagatccaaaatttgtgatccatgtgatgttccaaattcagtaagacctgcatcatat |
3315256 |
T |
|
| Q |
152 |
agaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
198 |
Q |
| |
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| | || |||||| ||||| |||||||| || ||||| |||||||| |
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| T |
3315255 |
atatcatcaagaaatcttctgaattcttgtttcagttgaatctctga |
3315209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 7164327 - 7164437
Alignment:
| Q |
10 |
agaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttct |
109 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||| |||||| ||||||||||||||||||| ||| ||||||||| ||||||| || |||||| |
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| T |
7164327 |
agaacctgggatatgctcttgccacgagtatcaatga----ttatgtgacaacttcccattccaatcaaaagtgatctcaaggaaagatttgagatttct |
7164422 |
T |
|
| Q |
110 |
gatgcatgtgatgtt |
124 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
7164423 |
gatgaatgtgatgtt |
7164437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 53 - 209
Target Start/End: Complemental strand, 3364665 - 3364509
Alignment:
| Q |
53 |
atgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgcatgtgatgttccgaattcattaagatctgcatcacata |
152 |
Q |
| |
|
|||||||||||||| || |||| || ||| ||||||| | ||||||||| |||| | ||||||||||||||| | |||| ||||| |||||||| ||| |
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| T |
3364665 |
atgtggcaacttccgataccaaacaaaagggatctcatggtaagattcgaaatttgtaatgcatgtgatgttctcatttcagtaagacctgcatcatata |
3364566 |
T |
|
| Q |
153 |
gaccacgaagaaaccttcttaattcttgctttagttgcatctctgaatgacagtgta |
209 |
Q |
| |
|
|| || |||||| |||| ||||||||||| ||||| |||||||||| ||| |||| |
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|
| T |
3364565 |
gatcatcaagaaatcttccgaattcttgcttcagttgaatctctgaatcacattgta |
3364509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 3286185 - 3286294
Alignment:
| Q |
11 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctg |
110 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||||| |||||||| || ||||||||||||||| ||| |||||||| || |||| || |||| || |
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| T |
3286185 |
gaacctgtgatatgctcttgctaagagcctcaatga----atatgtggaaatttcccattccaatcaaaagtgatctcaaagaaggatttgagatttgtg |
3286280 |
T |
|
| Q |
111 |
atgcatgtgatgtt |
124 |
Q |
| |
|
|||||||||||||| |
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|
| T |
3286281 |
atgcatgtgatgtt |
3286294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 6905497 - 6905680
Alignment:
| Q |
11 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctg |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||| ||||| ||||||| ||||| ||| || ||| |||| || |
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|
| T |
6905497 |
gaacctgtgataagctcttgccaagagtatcgacgactat----gtggcaacttcccattgtaatcaaaagagatttcaaggaaatatccgagatttttg |
6905592 |
T |
|
| Q |
111 |
atgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
198 |
Q |
| |
|
|||||||||||||| | ||||| |||||| |||| || |||||||| |||||| ||| |||||| ||| ||||||| ||| |||| |
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|
| T |
6905593 |
atgcatgtgatgtttccgattcagtaagatttgcaccatatagaccatcaagaaaacttgttaatttttgaattagttgaatcactga |
6905680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 32410763 - 32410867
Alignment:
| Q |
12 |
aacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctga |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||| ||| || ||||| || |||| || | || ||| |
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|
| T |
32410763 |
aacctgtgatatgctcttgccaagagtatcaataac----tatgtggcaacttcccattctaatcaaaagcgacctcaaagaatgatttgagaattgtga |
32410858 |
T |
|
| Q |
112 |
tgcatgtga |
120 |
Q |
| |
|
||||||||| |
|
|
| T |
32410859 |
tgcatgtga |
32410867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 15803444 - 15803262
Alignment:
| Q |
12 |
aacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctga |
111 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||| ||||| |||||||| || |||| || ||| ||||||| |||||||| ||| |||| | | |
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|
| T |
15803444 |
aacccgtgataagctcttgccaagagtattgatgac----aatgtgacaacttccgataccaaacaaaagggatctcatgaaaagatccgaaatttgtaa |
15803349 |
T |
|
| Q |
112 |
tgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctctga |
198 |
Q |
| |
|
||| ||||||||||| | |||| ||||| |||||||| ||||| | |||||| ||||| |||||||| || ||||| |||||||| |
|
|
| T |
15803348 |
tgcctgtgatgttcccacttcagtaagacctgcatcatatagattatcaagaaatcttctgaattcttgtttcagttgaatctctga |
15803262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 20839162 - 20839079
Alignment:
| Q |
12 |
aacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagatt |
99 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| ||||||| | || |||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
20839162 |
aacctgtgctaagctcttgccaagagtatctgtgactattt----gggaacttcccattccaatcacaagtgatttcaagaaaagatt |
20839079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 20812808 - 20812724
Alignment:
| Q |
11 |
gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcacaagagatctcaagaaaagatt |
99 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||| | || |||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
20812808 |
gaacctgtgctaagctcttgccaagagtatctgtgactattt----gggaacttcccattccaatcacaagtaatttcaaggaaagatt |
20812724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Original strand, 5874 - 5937
Alignment:
| Q |
52 |
tatgtggcaacttcccattccaatcacaagagatctcaagaaaagattcgacatttctgatgca |
115 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||| |||||| ||| |||| ||||||| |
|
|
| T |
5874 |
tatgtggcaacttcccattgtaatcaaaagagatttcaaggaaagatccgagatttgtgatgca |
5937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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