View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11019_low_6 (Length: 316)

Name: NF11019_low_6
Description: NF11019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11019_low_6
NF11019_low_6
[»] chr4 (1 HSPs)
chr4 (11-300)||(49766366-49766658)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 49766366 - 49766658
Alignment:
Q  11 agaacctgtgttgttgctattaggactgttatctt---cttcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttt 107  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766366 agaacctgtgttgttgctattaggactgttatcttcttcttcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttt 49766465  T
Q  108 tccttaagcttagctgaagcagtagtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766466 tccttaagcttagctgaagcagtagtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttc 49766565  T
Q  208 ttggactaaaatattcatcatctgcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766566 ttggactaaaatattcatcatctgcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattag 49766658  T

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