View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1101_high_3 (Length: 538)
Name: NF1101_high_3
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Complemental strand, 10794955 - 10794462
Alignment:
| Q |
9 |
gaagaaaatgaggaaagtaaaggatttcttaagttgttaggtacatatgaaaatgtaaagtatgtatatgtaaaagggacttttgggtttaggtatattt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794955 |
gaagaaaatgaggaaagtaaaggatttcttaagttgttaggtacatatgaaaatgtaaagtatgtatatgtaaaagggacttttgggtttaggtatattt |
10794856 |
T |
|
| Q |
109 |
aattatggttttgagaaaattggagtgagggacacttgttctaattgtcctttattggagaggtctatcttttttggaaatgtgaactccattagcatgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794855 |
aattatggttttgagaaaattggagtgagggacacttgttctaattgtcctttattggagaggtctatcttttttggaaatgtgaactccattagcatgt |
10794756 |
T |
|
| Q |
209 |
ggctggtgtaaaatgtggggtccactatgcgcataaatccacattccttcacacctcattatcaataatttgattttggcttcatttggtggttgaattt |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794755 |
ggctggtgtaaaatgtggggtccattatgcgcataaatccacattccttcacacctcaatatcaataatttgattttggcttcatttggtggttgaattt |
10794656 |
T |
|
| Q |
309 |
tggcacaattaggttataatcttggctcaaataagaaataacccccacattctttcttttttctgacacataattaccccatattctatttgcgtagctt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10794655 |
tggcacaattaggttataatcttggctcaaataagaaataacccccacattctttcttttttctgacacataattaccccatattctatttgcgtagctt |
10794556 |
T |
|
| Q |
409 |
ctatgatcatatattaaaaaacaaaatcgaaaatacttcttaagaacgttgaaagatgcattaacagattattcatcaacaaaatctttatata |
502 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10794555 |
ctctgatcatatgttaaaaaacaaaatcgaaaatacttcttaagaacgttgaaagatgcattaacatattattcatcaacaaaatctttatata |
10794462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University