View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_high_5 (Length: 420)
Name: NF1101_high_5
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 324
Target Start/End: Original strand, 32805520 - 32805831
Alignment:
| Q |
13 |
aatatccttccaactagaagtaatttgggtaagaaaggtatatccctggatatgagttgtcctctttgtaactccttaatagaagactcggatcaccttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32805520 |
aatatccttccaactagaagtaatttgggtaagaaaggtatatccctggatatgagttgtcctctttgtaactcctcaatagaagactcggatcaccttt |
32805619 |
T |
|
| Q |
113 |
ttatgcgctgccctgctgccttagcagtctggttctcttcccctcttgggatccatgtaccggaccaattggagttgatatcgtggatgaaagtgtggct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
32805620 |
ttatgcgctgccctgctgccttagcagtctggttctcttcccctcttgggatccatgtaccgaaccaattgaacttgatatcgtggatgaaagtgtggct |
32805719 |
T |
|
| Q |
213 |
gtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805720 |
gtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgag |
32805819 |
T |
|
| Q |
313 |
cctattgttatt |
324 |
Q |
| |
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|||||||||||| |
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| T |
32805820 |
cctattgttatt |
32805831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 6095397 - 6095086
Alignment:
| Q |
13 |
aatatccttccaactagaagtaatttgggtaagaaaggtatatccctggatatgagttgtcctctttgtaactccttaatagaagactcggatcaccttt |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| |
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| T |
6095397 |
aatatccttccaactagaagtaatttgggtaagaaaggtatatccctggatatgagttgtcctctttgtaacttctcaatagaagactcagatcaccttt |
6095298 |
T |
|
| Q |
113 |
ttatgcgctgccctgctgccttagcagtctggttctcttcccctcttgggatccatgtaccggaccaattggagttgatatcgtggatgaaagtgtggct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6095297 |
ttatgcgctgccctgctgccttagcagtctggttctcttcccctcttgggatccatgtaccggaccaattggacttgatatcgtggatgaaagtgtggct |
6095198 |
T |
|
| Q |
213 |
gtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgag |
312 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
6095197 |
gtcagcgccggacacccgtgcccaacaattattctgctactccctctggctgatttggagtcataggaaccaactagtttttaaccaatctgtgtttgag |
6095098 |
T |
|
| Q |
313 |
cctattgttatt |
324 |
Q |
| |
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|||||||||||| |
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|
| T |
6095097 |
cctattgttatt |
6095086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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