View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_1 (Length: 603)
Name: NF1101_low_1
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 15886055 - 15885466
Alignment:
| Q |
1 |
cattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggagagaggggtctccttgccttaaccctctaccagaa |
100 |
Q |
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| T |
15886055 |
cattagcttttgcttttcagataaaaacagataaacctttctcgtaaataatgaataagtagggagagaggggtctccttgccttaaccctctaccagga |
15885956 |
T |
|
| Q |
101 |
ataaaaggaacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
200 |
Q |
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| T |
15885955 |
ataaaaggtacaggtgtgctaccattaaacaaaatagaataatttacggtttcaacacacatcataatccatt-gttctattgatgagaaaaactcattt |
15885857 |
T |
|
| Q |
201 |
ccatcataacccctttgagataattcaagtcaattatgtcctatgtcttgctaatatcaagcttcaaaacaacatcgccatattttcctctaacttttac |
300 |
Q |
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| T |
15885856 |
ccatcataacccctttgagataattcaagtcaattatgtccgatgtcttgctaatatcaagcttcaaaacaacatcgccatattttcctctaacttttac |
15885757 |
T |
|
| Q |
301 |
atagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatgt |
400 |
Q |
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| T |
15885756 |
atagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttttcatgttgacggttgatgggaaaatacatgt |
15885657 |
T |
|
| Q |
401 |
caaaagccaaccacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatcttggatcgaatccatcctgtccaaggcattta |
500 |
Q |
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| T |
15885656 |
caaaagccaaccacaccattgattacaaatttcatctccatatctcgaccaattgttttgaaagaatcttggatcgaatccatcctgtccaaggcattta |
15885557 |
T |
|
| Q |
501 |
tctggtttcatagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgttgtaactttaatattttacctt |
591 |
Q |
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| T |
15885556 |
tctggtttcatagagaatagaacttccttgaattcttaaatcacaaaacatgctgataatgtgttttgttgtaactttaatattttacctt |
15885466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 300 - 433
Target Start/End: Complemental strand, 28959059 - 28958926
Alignment:
| Q |
300 |
catagagcaataggtcacaaatctttcatagaaacttggaattcaccttttggaattagggcgatgtttgtcatgttgacggttgatgggaaaatacatg |
399 |
Q |
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| T |
28959059 |
catagagcaataggtcactaatctttcatagaaactttggactcacctttttggattagggatatgtttgtcatatttaaggttgatgggaaagtaaatg |
28958960 |
T |
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| Q |
400 |
tcaaaagccaaccacaccattgattacaaatttc |
433 |
Q |
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| T |
28958959 |
ttgaaagccaaccgcaatattgattaaaaatttc |
28958926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 8942357 - 8942306
Alignment:
| Q |
149 |
gtttcaacacacatcataatccatttgttctattgatgagagaaactcattt |
200 |
Q |
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| T |
8942357 |
gtttctacacacatcatgatccacttgatctattgatgagataaactcattt |
8942306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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