View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1101_low_10 (Length: 360)

Name: NF1101_low_10
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1101_low_10
NF1101_low_10
[»] chr1 (9 HSPs)
chr1 (103-334)||(15373957-15374189)
chr1 (96-323)||(46358439-46358664)
chr1 (103-261)||(4530800-4530957)
chr1 (102-203)||(15374646-15374746)
chr1 (111-203)||(46357885-46357976)
chr1 (102-204)||(45597623-45597725)
chr1 (102-152)||(51610220-51610270)
chr1 (103-143)||(3788435-3788475)
chr1 (102-146)||(4626345-4626389)
[»] chr3 (9 HSPs)
chr3 (104-334)||(51492274-51492504)
chr3 (102-334)||(42146799-42147030)
chr3 (136-254)||(44385128-44385245)
chr3 (103-203)||(42147497-42147596)
chr3 (103-202)||(51491709-51491807)
chr3 (102-151)||(46580363-46580412)
chr3 (103-204)||(53714487-53714588)
chr3 (214-269)||(33968290-33968346)
chr3 (103-143)||(50306531-50306571)
[»] chr7 (8 HSPs)
chr7 (103-334)||(9379612-9379843)
chr7 (102-254)||(37693458-37693609)
chr7 (102-237)||(36661684-36661819)
chr7 (102-157)||(9378728-9378783)
chr7 (111-269)||(34996885-34997045)
chr7 (213-275)||(23624384-23624447)
chr7 (169-228)||(30915799-30915858)
chr7 (169-217)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (117-334)||(67807-68024)
scaffold0016 (103-203)||(67247-67346)
[»] chr2 (3 HSPs)
chr2 (103-261)||(6198795-6198951)
chr2 (103-218)||(5504344-5504458)
chr2 (103-143)||(26021919-26021959)
[»] chr8 (3 HSPs)
chr8 (103-261)||(511334-511491)
chr8 (51-97)||(44458876-44458922)
chr8 (51-97)||(44466409-44466455)
[»] chr6 (1 HSPs)
chr6 (206-276)||(25371271-25371342)
[»] chr4 (7 HSPs)
chr4 (102-228)||(5825333-5825457)
chr4 (168-228)||(20350402-20350462)
chr4 (102-153)||(55879793-55879844)
chr4 (102-156)||(49708720-49708774)
chr4 (213-269)||(38321177-38321233)
chr4 (177-221)||(6680273-6680317)
chr4 (213-276)||(34155500-34155564)
[»] chr5 (1 HSPs)
chr5 (103-143)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 103 - 334
Target Start/End: Original strand, 15373957 - 15374189
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatgg-aaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 15374056  T
Q  202 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 301  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15374057 tcaccactagattttttcacactatctcccacatccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 15374156  T
Q  302 ttcccaactctttcaatctctcatcaacttcat 334  Q
    |||||||||||||||||||||||||||||||||    
T  15374157 ttcccaactctttcaatctctcatcaacttcat 15374189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 96 - 323
Target Start/End: Complemental strand, 46358664 - 46358439
Alignment:
Q  96 ctacggaggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcat 195  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46358664 ctacggaggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagttgatttctaatcctttaatcaaatgaagagcatagttttatcat 46358565  T
Q  196 agtctctcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 295  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358564 agtctctcaccactaaattttttcacactatctcccacacccttt--tctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 46358467  T
Q  296 tccaaattcccaactctttcaatctctc 323  Q
    ||||||||||||||||||||||||||||    
T  46358466 tccaaattcccaactctttcaatctctc 46358439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 4530957 - 4530800
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| |||| |||||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  203 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 261  Q
    |||||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||    
T  4530857 caccactagatttttttcacactatatcccacaccc--ttctctcctccatcccaactca 4530800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 203
Target Start/End: Complemental strand, 15374746 - 15374646
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | |||||||||||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctc 15374648  T
Q  202 tc 203  Q
    ||    
T  15374647 tc 15374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 111 - 203
Target Start/End: Original strand, 46357885 - 46357976
Alignment:
Q  111 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 203  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| || || ||| || |||| |||| || | |||||||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccatgggcaagttgattt-tagtcattggattaaataaagaacacacttttatcatagtctctc 46357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 204
Target Start/End: Original strand, 45597623 - 45597725
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||   |||||| | ||||||||||| | |||| |  ||| ||||  ||| ||||||  |||| |||||| |||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctc 45597722  T
Q  202 tca 204  Q
    |||    
T  45597723 tca 45597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 51610270 - 51610220
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagtt 152  Q
    |||||||||||||||||||  || | |||||||||||||||||| ||||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 4626389 - 4626345
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatgga 146  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||    
T  4626389 aggtggcatttagggtgggagagggaaaaaatttcccaccatgga 4626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 104 - 334
Target Start/End: Complemental strand, 51492504 - 51492274
Alignment:
Q  104 gtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 203  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  204 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492404 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 51492305  T
Q  304 cccaactctttcaatctctcatcaacttcat 334  Q
    |||||||||||||||||||||||||||||||    
T  51492304 cccaactctttcaatctctcatcaacttcat 51492274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 102 - 334
Target Start/End: Original strand, 42146799 - 42147030
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42146799 aggtggcatttagggtgggatggg-aaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctc 42146897  T
Q  202 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146898 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 42146997  T
Q  302 ttcccaactctttcaatctctcatcaacttcat 334  Q
    |||||||||||||||||||||||||||||||||    
T  42146998 ttcccaactctttcaatctctcatcaacttcat 42147030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 44385245 - 44385128
Alignment:
Q  136 cccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatt-ttttcacactatctcccaca 234  Q
    ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||    
T  44385245 cccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctcaccactagatttttttcacactatatcccaca 44385146  T
Q  235 cccttttctctcctccatcc 254  Q
    |||  |||||||||||||||    
T  44385145 ccc--ttctctcctccatcc 44385128  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 42147596 - 42147497
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 42147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 51491709 - 51491807
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 51491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Original strand, 46580363 - 46580412
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagt 151  Q
    |||||||||||||||||||  || |||| ||||||| |||||||||||||    
T  46580363 aggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 53714487 - 53714588
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||   |||||| | ||||||||||||| |||| |  ||| |||   ||| ||||||  |||| |||||| ||||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  203 ca 204  Q
    ||    
T  53714587 ca 53714588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 33968290 - 33968346
Alignment:
Q  214 tttttcacactatctcccac-acccttttctctcctccatccccactcacccaccac 269  Q
    |||||||||||||||| ||| | | || |||||| ||||||||||||||||||||||    
T  33968290 tttttcacactatctctcaccatcattctctctcttccatccccactcacccaccac 33968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 103 - 334
Target Start/End: Complemental strand, 9379843 - 9379612
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctct 9379744  T
Q  203 caccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaat 302  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9379743 caccactagattttttcacactatctcccacaccattttctctcctccatccccactcacccaccacgagcaaaccacaaccaagtccatgcgtccaaat 9379644  T
Q  303 tcccaactctttcaatctctcatcaacttcat 334  Q
    ||||||||||||||||||||||||||||||||    
T  9379643 tcccaactctttcaatctctcatcaacttcat 9379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 37693609 - 37693458
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||    
T  37693609 aggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactc 37693510  T
Q  202 tcaccactagatt-ttttcacactatctcccacacccttttctctcctccatcc 254  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||||||||    
T  37693509 tcaccactagatttttttcacactatatcccacaccc--ttctctcctccatcc 37693458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 36661684 - 36661819
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    |||||||||||||||||||   |||||| | ||||||||||||| |||||   ||| | | | ||  ||||| ||||||||||| |||||| |||| |||    
T  36661684 aggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagtatttttgtgaccattagatcaattgaagagcataattttattatagactc 36661783  T
Q  202 tcaccactagattttttcacactatctcccacaccc 237  Q
    |||||| |||||||||||||||||||| ||||||||    
T  36661784 tcaccattagattttttcacactatcttccacaccc 36661819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 9378728 - 9378783
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgattt 157  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattt 9378783  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 269
Target Start/End: Original strand, 34996885 - 34997045
Alignment:
Q  111 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccacta 210  Q
    |||||||||||  | |||| | |||||||| |||| ||||| ||||| | ||| ||  || ||||||| | |||| |||||| |||| || ||| |||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagt-gatttttgatcattagattaaatgaataacataattttataatagactttcaacacta 34996983  T
Q  211 gatttt---ttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 269  Q
    ||||||   |||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  34996984 gatttttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 34997045  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 23624447 - 23624384
Alignment:
Q  213 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaa 275  Q
    ||||||||||||||||| ||| ||| || |||||| |||||||||| ||||||||||| |||||    
T  23624447 ttttttcacactatctctcaccaccattctctctcttccatccccattcacccaccacaagcaa 23624384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 30915799 - 30915858
Alignment:
Q  169 atcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 228  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  30915799 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 30915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 30402836 - 30402788
Alignment:
Q  169 atcaaatgaagagcatagttttatcatagtctctcaccactagattttt 217  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| ||||||    
T  30402836 atcaaatgaagaccatacttttatcatactctctcaacactatattttt 30402788  T

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Target: scaffold0016 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 117 - 334
Target Start/End: Complemental strand, 68024 - 67807
Alignment:
Q  117 tgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 216  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68024 tgggatggggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 67925  T
Q  217 ttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaattcccaactctttca 316  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  67924 ttcacactatctcccacatccttttctctcctccatccccactcacccaccacgaacaaaccaccaccaagtccatgtgtccaaattcccaactctttca 67825  T
Q  317 atctctcatcaacttcat 334  Q
    ||||||||||||||||||    
T  67824 atctctcatcaacttcat 67807  T

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Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 67247 - 67346
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 67345  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 6198951 - 6198795
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||   |||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||||||||| |||||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  203 caccactagattttttcacactatctcccacacccttttctctcctccatccccactca 261  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  6198851 caccactagatttttttacactatctcccacaccc--ttctctcctccatcccaactca 6198795  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 5504344 - 5504458
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| |||||| | | | ||  |||||||||| | |||| |||||| ||||  | |    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaag-tgatttttgaccattagatcaaatgaataacataattttataatagatttt 5504442  T
Q  203 caccactagatttttt 218  Q
    || |||||||||||||    
T  5504443 caacactagatttttt 5504458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 26021959 - 26021919
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 511491 - 511334
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 202  Q
    ||||||||||||||||||    ||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||||| |||||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  203 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 261  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||    
T  511391 caccactagatttttttcacactatctcccacaccc--ttctctcctccatcccaactca 511334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 44458922 - 44458876
Alignment:
Q  51 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44458922 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44458876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 44466455 - 44466409
Alignment:
Q  51 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44466455 ttcacagttacactatcaccactttagtagtacttgatcagttcgct 44466409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 276
Target Start/End: Original strand, 25371271 - 25371342
Alignment:
Q  206 cactagattttttcacactatctccca-cacccttttctctcctccatccccactcacccaccacgagcaaa 276  Q
    |||||||||||||||||||||||| || || | || |||||| |||||||| ||||||||||||| ||||||    
T  25371271 cactagattttttcacactatctctcaccatcattctctctcttccatccctactcacccaccacaagcaaa 25371342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 228
Target Start/End: Original strand, 5825333 - 5825457
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 201  Q
    ||||||||||||||||||||  |||||| | ||||||||||| | ||||||  ||||||| | ||  ||||||||| || || | | ||||| || ||||    
T  5825333 aggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagtt-ttttctaaccattagatcaaatgaggaacacattattatcctactctc 5825431  T
Q  202 tcaccactagattttttcacactatct 228  Q
    ||| ||||||||||||| |||||||||    
T  5825432 tcaacactagatttttt-acactatct 5825457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 20350402 - 20350462
Alignment:
Q  168 aatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 228  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  20350402 aatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatct 20350462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 55879793 - 55879844
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttg 153  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttg 55879844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 49708774 - 49708720
Alignment:
Q  102 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatt 156  Q
    |||||||||||||||||||   |||||| | ||||||||||||||||||| ||||    
T  49708774 aggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagatt 49708720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 38321233 - 38321177
Alignment:
Q  213 ttttttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 269  Q
    |||||||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  38321233 ttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 38321177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 6680317 - 6680273
Alignment:
Q  177 aagagcatagttttatcatagtctctcaccactagattttttcac 221  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||    
T  6680317 aagaacatagttttatcatagattctcaacactagattttttcac 6680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 34155564 - 34155500
Alignment:
Q  213 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaaa 276  Q
    ||||||||||||||||| ||| | | || |||||| |||| ||||||||||||||||| ||||||    
T  34155564 ttttttcacactatctctcaccatcattctctctcttccacccccactcacccaccacaagcaaa 34155500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  103 ggtggcatttagggtgggatggggaaatattttcccaccat 143  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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