View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_11 (Length: 359)
Name: NF1101_low_11
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 54621920 - 54622092
Alignment:
| Q |
52 |
caaagttgatgggtctattgaattattctttgattnnnnnnntgactattaaaatatctttaaacttatttcttcgtcaattgaatgtatagaatacaaa |
151 |
Q |
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| T |
54621920 |
caaagttgataggtctattgaattattctttgattaaaaaaatgactattaaaatatctttaaacttgtttcttcgtcaattgaatgtatagaatacaaa |
54622019 |
T |
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| Q |
152 |
-gacttctgacacaaataatgtgaaataatgtgtcattcacctgtattagaaattaatagaattgcagttgaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54622020 |
agacttctgacacaaataatgtgaaataatgtgtcattcacctgtattagaaattaatagaattgcagttgaa |
54622092 |
T |
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