View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1101_low_12 (Length: 316)

Name: NF1101_low_12
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1101_low_12
NF1101_low_12
[»] chr4 (3 HSPs)
chr4 (1-212)||(22255612-22255823)
chr4 (167-214)||(32893602-32893649)
chr4 (167-212)||(49346106-49346151)
[»] chr1 (4 HSPs)
chr1 (1-156)||(38150682-38150837)
chr1 (167-212)||(13536999-13537044)
chr1 (113-153)||(49420143-49420183)
chr1 (113-153)||(51051254-51051294)
[»] chr8 (5 HSPs)
chr8 (1-216)||(5433530-5433746)
chr8 (76-153)||(5873224-5873298)
chr8 (180-212)||(8491468-8491500)
chr8 (113-149)||(35840479-35840515)
chr8 (180-212)||(45163133-45163165)
[»] chr2 (5 HSPs)
chr2 (213-299)||(14163345-14163431)
chr2 (171-212)||(5142561-5142602)
chr2 (167-212)||(17946841-17946886)
chr2 (184-224)||(9370946-9370986)
chr2 (113-153)||(30545384-30545424)
[»] scaffold0725 (1 HSPs)
scaffold0725 (103-156)||(5825-5878)
[»] scaffold0216 (1 HSPs)
scaffold0216 (103-156)||(24537-24590)
[»] chr7 (4 HSPs)
chr7 (213-259)||(17909432-17909478)
chr7 (170-212)||(28868831-28868873)
chr7 (115-153)||(23632981-23633019)
chr7 (167-212)||(36661685-36661730)
[»] chr3 (4 HSPs)
chr3 (172-212)||(10343330-10343370)
chr3 (167-215)||(31891255-31891303)
chr3 (167-217)||(53714482-53714532)
chr3 (113-153)||(49085358-49085398)
[»] chr5 (3 HSPs)
chr5 (115-154)||(6903219-6903258)
chr5 (180-212)||(6353684-6353716)
chr5 (180-212)||(6354701-6354733)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 22255823 - 22255612
Alignment:
Q  1 agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagacaatgcaaagaaa 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22255823 agaggctcaaattggacatgcaatagaggttaaagttattgatggtggtgtaggttaattgcaggttttaaaatctgaggttgaagacaatgcaaagaaa 22255724  T
Q  101 taatatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatgaccnnnnnnnnccttcccatggaggaaaaatcttcccctcacccacc 200  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||        | ||||||||| ||||||| ||| ||||||||||||    
T  22255723 taatataataatgacagaccatcataaaatatgtgctcctctttaatctaatgaccaaaaaaaactttcccatggtggaaaaagctttccctcacccacc 22255624  T
Q  201 ctaaatgccacc 212  Q
    |||||| |||||    
T  22255623 ctaaattccacc 22255612  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 32893649 - 32893602
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccaccct 214  Q
    ||||||||  |||||| |||| ||||||||||||||||||||||||||    
T  32893649 ttcccatgatggaaaattctttccctcacccaccctaaatgccaccct 32893602  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 49346151 - 49346106
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||||||  |||||| |||| ||||||||||||||||||||||||    
T  49346151 ttcccatgatggaaaattctttccctcacccaccctaaatgccacc 49346106  T

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Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 38150682 - 38150837
Alignment:
Q  1 agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagacaatgcaaagaaa 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  38150682 agaggctcgaattggacatgcaatagaggttaaagttattgatggtggtgtagattaattgctggttttaaaatctgaggttgaagacaatgcaaagaaa 38150781  T
Q  101 taatatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatgacc 156  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38150782 taatatagtaatggcagaccatcataaaatctgtgctcctctttaatctaatgacc 38150837  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 13536999 - 13537044
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||||||| || ||| |||| ||||||||||||||||||||||||    
T  13536999 ttcccatggtgggaaattctttccctcacccaccctaaatgccacc 13537044  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 49420183 - 49420143
Alignment:
Q  113 gacagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    |||||||||||||||||| ||||| ||| ||||||||||||    
T  49420183 gacagaccatcataaaatgtgtgcacctatttaatctaatg 49420143  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 51051254 - 51051294
Alignment:
Q  113 gacagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  51051254 gacataccatcataaaatgtgtgcacctctttaatctaatg 51051294  T

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Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5433530 - 5433746
Alignment:
Q  1 agaggcttgaattggacatgcaatagaggttaaagttattgatggtgatgtaggttaattgtaggttttaaaatctgaggttgaagac-aatgcaaagaa 99  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||    
T  5433530 agaggctcgaattggacatgcaatagaggttaaagttattgatggtggtgtaggttaattgcacgttttaaaatctgaggttgaagacaaatgcaaagaa 5433629  T
Q  100 ataatatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatgaccnnnnnnnnccttcccatggaggaaaaatcttcccctcacccac 199  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |        | ||||| ||  ||||||||| | || ||| ||||    
T  5433630 ataatatagtaatgacagaccatcataaaatatgtgctcctctttaatctaatgatcaaaaattactttcccgtgatggaaaaatcattccttcatccac 5433729  T
Q  200 cctaaatgccaccctaa 216  Q
    |||||||||||||||||    
T  5433730 cctaaatgccaccctaa 5433746  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 5873298 - 5873224
Alignment:
Q  76 tgaggttgaagacaatgcaaagaaataatatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    ||||||||||||||||| ||| |||||   ||||   |||||||||||||||||| |||| |||| ||||||||||||    
T  5873298 tgaggttgaagacaatgaaaaaaaata---tagtgtggacagaccatcataaaatatgtgttcctttttaatctaatg 5873224  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 8491500 - 8491468
Alignment:
Q  180 aaaatcttcccctcacccaccctaaatgccacc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  8491500 aaaatctttccctcacccaccctaaatgccacc 8491468  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 35840479 - 35840515
Alignment:
Q  113 gacagaccatcataaaatctgtgctcctctttaatct 149  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  35840479 gacagaccatcataaaatgtgtgcacctctttaatct 35840515  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 45163133 - 45163165
Alignment:
Q  180 aaaatcttcccctcacccaccctaaatgccacc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  45163133 aaaatctttccctcacccaccctaaatgccacc 45163165  T

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Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 14163345 - 14163431
Alignment:
Q  213 ctaaaatgattgtgtatcgttgaatggaaataaatgtatggggtaaactgcggtctaataaatgtatgttgacataagagacgagat 299  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14163345 ctaaaatgattgtgtatcattgaatggaaataaatttatggggtaaactgcggtctaataaatgtatgttgacataagagatgagat 14163431  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 5142561 - 5142602
Alignment:
Q  171 catggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||| |||||| |||| ||||||||||||||||||||||||    
T  5142561 catggtggaaaattctttccctcacccaccctaaatgccacc 5142602  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 17946886 - 17946841
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||||||  |||||| |||| ||||||||||||||||||||||||    
T  17946886 ttcccatgatggaaaattctttccctcacccaccctaaatgccacc 17946841  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 9370986 - 9370946
Alignment:
Q  184 tcttcccctcacccaccctaaatgccaccctaaaatgattg 224  Q
    |||| |||| |||||||||||||||||||||||| ||||||    
T  9370986 tctttcccttacccaccctaaatgccaccctaaattgattg 9370946  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 30545384 - 30545424
Alignment:
Q  113 gacagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    |||| ||||||||||||| ||||| ||||||||||||||||    
T  30545384 gacaaaccatcataaaatgtgtgcacctctttaatctaatg 30545424  T

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Target: scaffold0725 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Complemental strand, 5878 - 5825
Alignment:
Q  103 atatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatgacc 156  Q
    |||||||  ||||||||||| ||||||| |||||||||||||||||||||||||    
T  5878 atatagtgttgacagaccataataaaatatgtgctcctctttaatctaatgacc 5825  T

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Target: scaffold0216 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 24537 - 24590
Alignment:
Q  103 atatagtaatgacagaccatcataaaatctgtgctcctctttaatctaatgacc 156  Q
    |||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||    
T  24537 atatagtattgacagaccataataaaatatgtgctgctctttaatctaatgacc 24590  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 259
Target Start/End: Original strand, 17909432 - 17909478
Alignment:
Q  213 ctaaaatgattgtgtatcgttgaatggaaataaatgtatggggtaaa 259  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||    
T  17909432 ctaaaatgattgtgtatcattgaatagaaataagtgtatggggtaaa 17909478  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 28868873 - 28868831
Alignment:
Q  170 ccatggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||||||||||| |||| ||||||||||||||||||||||||    
T  28868873 ccatggaggaaaattctttccctcacccaccctaaatgccacc 28868831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 23633019 - 23632981
Alignment:
Q  115 cagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  23633019 cagaccatcataaaatctatactcctctttaatctaatg 23632981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 36661730 - 36661685
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    ||||||||| || ||| |||| ||||||||||||||||||||||||    
T  36661730 ttcccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 10343370 - 10343330
Alignment:
Q  172 atggaggaaaaatcttcccctcacccaccctaaatgccacc 212  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  10343370 atggtggaaaaatctttccctcacccaccctaaatgccacc 10343330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 31891303 - 31891255
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccacccta 215  Q
    |||||||||||| ||| |||| ||||||||||||||||||||| |||||    
T  31891303 ttcccatggagggaaattctttccctcacccaccctaaatgccgcccta 31891255  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 53714532 - 53714482
Alignment:
Q  167 ttcccatggaggaaaaatcttcccctcacccaccctaaatgccaccctaaa 217  Q
    ||||||||| || ||| |||| |||||||||||||||||||||||| ||||    
T  53714532 ttcccatggtgggaaattctttccctcacccaccctaaatgccaccataaa 53714482  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 49085398 - 49085358
Alignment:
Q  113 gacagaccatcataaaatctgtgctcctctttaatctaatg 153  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  49085398 gacagaccacaataaaatctatgctcctctttaatctaatg 49085358  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 154
Target Start/End: Original strand, 6903219 - 6903258
Alignment:
Q  115 cagaccatcataaaatctgtgctcctctttaatctaatga 154  Q
    |||||||||||||||||| | |||||||||||||||||||    
T  6903219 cagaccatcataaaatctatactcctctttaatctaatga 6903258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 6353716 - 6353684
Alignment:
Q  180 aaaatcttcccctcacccaccctaaatgccacc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  6353716 aaaatctttccctcacccaccctaaatgccacc 6353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 6354701 - 6354733
Alignment:
Q  180 aaaatcttcccctcacccaccctaaatgccacc 212  Q
    |||||||| ||||||||||||||||||||||||    
T  6354701 aaaatctttccctcacccaccctaaatgccacc 6354733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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