View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_13 (Length: 311)
Name: NF1101_low_13
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 308
Target Start/End: Original strand, 4075284 - 4075562
Alignment:
| Q |
30 |
gagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaaggctcccattgcttcctatagatagatggatggccttct |
129 |
Q |
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| T |
4075284 |
gagacaccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttagaggctcccattgcttcctatagatagatggatgaccttct |
4075383 |
T |
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| Q |
130 |
tttctgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctctagttttcaaatcttctagaacattttcaaccacttgcatcattttag |
229 |
Q |
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| T |
4075384 |
tttctgtactctgagagttgtgttatgttaagcaattgaacattcaaacctcttcttttcaaatcttgtagaacattttccaccacttgcatcattttag |
4075483 |
T |
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| Q |
230 |
gaacagaaccatttccactatatccatcttctgtaatttgatctctttctttgtaacaattttcaccctatgctactcc |
308 |
Q |
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| T |
4075484 |
gaacagaaccatttccactatatccctcttctttaatttgatctctttctttgtaacaattttcaccctttgctcctcc |
4075562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 25824872 - 25824676
Alignment:
| Q |
34 |
caccaatgtatgcaatctgcataagattttggatttgatatttgctcttctgttaaaggctcccattgcttcctatagatagatggatggccttcttttc |
133 |
Q |
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|||||||||||||||||||||||| |||||||||||||| || |||| |||| ||| ||||| || |||||||||||||| || || |||||||||| |
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| T |
25824872 |
caccaatgtatgcaatctgcataaccatttggatttgatatctgttcttgagttagaggttcccactgtttcctatagatagaagggtgaccttcttttc |
25824773 |
T |
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| Q |
134 |
tgtactctgatagctgtgtgatgttaagcaattgaacattcaaacctctagttttcaaatcttctagaacattttcaaccacttgcatcattttagg |
230 |
Q |
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| T |
25824772 |
tgtattctgagagttgtgtgatgttaagcatttgaacatttaaaccttttgttttcaaatcatcaagcaccttctccaccacttgcatcattttagg |
25824676 |
T |
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