View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_14 (Length: 287)
Name: NF1101_low_14
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 20542036 - 20542231
Alignment:
| Q |
44 |
tcgaagaatattgaatctggggtaaatgtaacttatgtgcaactataaccatactaacaaattctgataaatatcaactacacatacctgggttattctt |
143 |
Q |
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||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| |
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| T |
20542036 |
tcgaataatattgaatctgaggtaaatgaaacttatgtgcaactataaccatactaacaaattcttataaatatcaactctacctacctgggttttgctt |
20542135 |
T |
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| Q |
144 |
catcattaacatggtttcctctaattttgagttggccatcatccatcctcacacccttagtacaaaaactacatccatcatagatccatccatatt |
239 |
Q |
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| T |
20542136 |
catcattaatatggtttcctctacatttgagttggccattatccatcctcacacctttagtacaaaaattgcatccatcatagatccatccatatt |
20542231 |
T |
|
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Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 4265912 - 4266107
Alignment:
| Q |
44 |
tcgaagaatattgaatctggggtaaatgtaacttatgtgcaactataaccatactaacaaattctgataaatatcaactacacatacctgggttattctt |
143 |
Q |
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||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| |
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| T |
4265912 |
tcgaataatattgaatctgaggtaaatgaaacttatgtgcaactataaccatactaacaaattcttataaatatcaactctacctacctgggttttgctt |
4266011 |
T |
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| Q |
144 |
catcattaacatggtttcctctaattttgagttggccatcatccatcctcacacccttagtacaaaaactacatccatcatagatccatccatatt |
239 |
Q |
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||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
4266012 |
catcattaatatggtttcctctacatttgagttggccattatccatcctcacacctttagtacaaaaattgcatccatcatagatccatccatatt |
4266107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 21908676 - 21908871
Alignment:
| Q |
44 |
tcgaagaatattgaatctggggtaaatgtaacttatgtgcaactataaccatactaacaaattctgataaatatcaactacacatacctgggttattctt |
143 |
Q |
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||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||| | ||| |
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| T |
21908676 |
tcgaataatattgaatctgaggtaaatgaaacttatgtgcaactataaccatactaacaaattcttataaatatcaactctacctacctgggttttgctt |
21908775 |
T |
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| Q |
144 |
catcattaacatggtttcctctaattttgagttggccatcatccatcctcacacccttagtacaaaaactacatccatcatagatccatccatatt |
239 |
Q |
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||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
21908776 |
catcattaatatggtttcctctacatttgagttggccattatccatcctcacacctttagtacaaaaattgcatccatcatagatccatccatatt |
21908871 |
T |
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