View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1101_low_15 (Length: 277)
Name: NF1101_low_15
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 77 - 258
Target Start/End: Complemental strand, 2627528 - 2627347
Alignment:
| Q |
77 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627528 |
atcaaacttgattacacgggcatagatttgtgatattgagtttgaacgagtccacacaatttcaaccaagttttcccaaaattgagtatgtatgtgattc |
2627429 |
T |
|
| Q |
177 |
aactagattttcctacctagaaacataccacaaacttgtttactagtcctcttgtgagtttgttaaccatgcttgtgatgat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627428 |
aactagattttcctacctagaaacataccacaaactagtttactagtcctcttgtgagtttgttaaccatgcttgtgatgat |
2627347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 2627604 - 2627573
Alignment:
| Q |
1 |
agatggagcaaagaagtagaatcatacggtga |
32 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2627604 |
agatggagcaaagaagtagaatcatacggtga |
2627573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University