View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_19 (Length: 208)
Name: NF1101_low_19
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28296286 - 28296146
Alignment:
| Q |
1 |
atagcaatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttg |
100 |
Q |
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| T |
28296286 |
atagcaatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttg |
28296187 |
T |
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| Q |
101 |
gtgagtcaaatttgacttgaactatattcctagcccctatg |
141 |
Q |
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| T |
28296186 |
gtgagtcaaatttgacttgaactatattcccagcccctatg |
28296146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 36991246 - 36991368
Alignment:
| Q |
5 |
caatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttggtga |
104 |
Q |
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| T |
36991246 |
caatgaagaacatgaatatctaccaatatcccattgaaaaactgagggtgcagccggtaggcctaattgtcgcttttgctgtgatggccacacttggtga |
36991345 |
T |
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| Q |
105 |
gtcaaatttgacttgaactatatt |
128 |
Q |
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| T |
36991346 |
gtcata-ttgacttaaactatatt |
36991368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 37016686 - 37016808
Alignment:
| Q |
5 |
caatgaagaacataaatatctatcagtatcccatcggaaagctgagggtgcagccagtaggcataattgtttttgctgctgtcatggccacacttggtga |
104 |
Q |
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||||||||||||| |||||||| || |||||||| | ||| |||||||||||||| |||||| ||||||| | |||||| ||||||||||||||||| |
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| T |
37016686 |
caatgaagaacatgaatatctaccaatatcccattgaaaaactgagggtgcagccggtaggcctaattgtcgcttttgctgtgatggccacacttggtga |
37016785 |
T |
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| Q |
105 |
gtcaaatttgacttgaactatatt |
128 |
Q |
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|||| | ||||||| ||||||||| |
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| T |
37016786 |
gtcata-ttgacttaaactatatt |
37016808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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