View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_4 (Length: 497)
Name: NF1101_low_4
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_4 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 14534758 - 14534374
Alignment:
| Q |
16 |
atttccaaaagctttgtgactttttgaccgatcaaaactacatcatcacatcttcgactggcaggtactataggtcttaaacattgatatatgtgttatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14534758 |
atttccaaaagctttgtgactttttgacagagcaaaactacatcatcacatcttcgactggcaggtactataggtcttaaacattgatatatgtgttatg |
14534659 |
T |
|
| Q |
116 |
aattttaccgaatagcatactttggtttgaccgtgaaagtgaatgcttgattcgtcgacttaagtgattattttaacaaggattccaggttgttttcgtg |
215 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14534658 |
aattttaccgaatagcatactttggtttaaccgtgaaagtgaatgcttgattcgtcgacttaagtgattattttaacacagattccaggttgttttcgtg |
14534559 |
T |
|
| Q |
216 |
gtaattatttttgtaatttaacccacaatactttgaaaaaacttatgaatccgcacggcttggcgagagaattctgcatatcttatctatgattgttttt |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14534558 |
gtaattatttttgtaatttaacccacaatactttgaaaaaacttatgaatctgcacggcttggcgagagaattctgcatatcttatctatgattgttttt |
14534459 |
T |
|
| Q |
316 |
atttgccatttcaaacctttttaccgtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaatgtcaaagc |
400 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14534458 |
atttgccatttcaaacctttttacggtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaatgtcaaagc |
14534374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 14530409 - 14530025
Alignment:
| Q |
16 |
atttccaaaagctttgtgactttttgaccgatcaaaactacatcatcacatcttcgactggcaggtactataggtcttaaacattgatatatgtgttatg |
115 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||| |
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| T |
14530409 |
atttccaaaagctttgtgactttttgacagatcaaaactacatcatcacatctttgactggcaggtagtataggttttaaacatcgatatatgtgttatg |
14530310 |
T |
|
| Q |
116 |
aattttaccgaatagcatactttggtttgaccgtgaaagtgaatgcttgattcgtcgacttaagtgattattttaacaaggattccaggttgttttcgtg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14530309 |
aattttaccgaatagcatactttggtttgaccgtgaaagtgaatgcttgattcgtcgacttaagtgattattttaacaaggattccaggttgttttcgtg |
14530210 |
T |
|
| Q |
216 |
gtaattatttttgtaatttaacccacaatactttgaaaaaacttatgaatccgcacggcttggcgagagaattctgcatatcttatctatgattgttttt |
315 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14530209 |
gttattatttttgtaatttaacccacaatactttgaaaaaacttatgaatctgcacgccttggcgagagaattctgcatatcttatctatgattgttttt |
14530110 |
T |
|
| Q |
316 |
atttgccatttcaaacctttttaccgtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaatgtcaaagc |
400 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14530109 |
atttgccatttcaaacctctttaccgtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaatgtcaaagc |
14530025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 14517246 - 14517020
Alignment:
| Q |
16 |
atttccaaaagctttgtgactttttgaccgatcaaaactacatcatcacatcttcgactggcaggtactataggtcttaaacattgatatatgtgttatg |
115 |
Q |
| |
|
||||||||| ||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||| |||||||||||||| |||||||||| |
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| T |
14517246 |
atttccaaacgctttgtgaatttttgacagatcaaaactacatcatcacatcctcaactggcaggtagcatagttcttaaacattgatgtatgtgttata |
14517147 |
T |
|
| Q |
116 |
aattttaccgaatagcatactttggtttgaccgt-gaaagtgaatgcttgattcgtcgacttaagtgattattttaacaaggattccaggttgttttcgt |
214 |
Q |
| |
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||||| |||| ||||||||| ||| ||||| |||||||||| |||||||||||||||||| ||||||||| | ||| ||||| |||||||| || |
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| T |
14517146 |
tattttgatgaatggcatacttttgttcaaccgtaaaaagtgaatgtctgattcgtcgacttaagttattattttagctaggcttccaagttgttttggt |
14517047 |
T |
|
| Q |
215 |
ggtaattatttttgtaatttaacccaca |
242 |
Q |
| |
|
| ||||||||| |||||||| ||||| |
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|
| T |
14517046 |
tattattattttt-taatttaatccaca |
14517020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 14516994 - 14516932
Alignment:
| Q |
330 |
acctttttaccgtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaat |
392 |
Q |
| |
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|||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14516994 |
acctctttactgtcttttatcaggccatgggtggtaattgaaaaacaagtaggtctcaaaaat |
14516932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 37339685 - 37340092
Alignment:
| Q |
16 |
atttccaaaagctttgtgactttttgaccgatcaaaactacatcatcacatcttcgactggcaggtactatagg--------tcttaaacattgatatat |
107 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||| ||||| |||||||||||||| | | |
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| T |
37339685 |
atttccaaaagctttgtgactttttgacaaatccaaactacatcatagcatcttcaactggcaggtagtatagacttatagttcttaaacattgatgtct |
37339784 |
T |
|
| Q |
108 |
gtgttatgaattttaccgaatagcatactt--------------tggtttgaccgtgaaag-tgaatgcttgattcgtcgacttaagtgattattttaac |
192 |
Q |
| |
|
|||||||| ||||| ||||||| ||||| ||||| ||||||||| ||||||| ||||||||| || ||||| ||||||||||| |
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| T |
37339785 |
gtgttatgtattttgatgaatagcttacttgggttatttactattggttcatccgtgaaaggtgaatgcctgattcgtcaacctaagttattattttaac |
37339884 |
T |
|
| Q |
193 |
aaggattccaggttgttttcgtggtaattatttttgtaatttaacccacaatactttgaaaaaacttatgaatccgcacggcttggcgagagaattctgc |
292 |
Q |
| |
|
|||| |||||||||||||| |||||| | ||||||||||||||||||| |||| |||| || || ||| ||| | || ||||||| ||||||| |
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|
| T |
37339885 |
aaggcttccaggttgttttgccagtaattttgtttgtaatttaacccacaacacttacaaaattattttggatctgcaagcctaggcgagataattctgt |
37339984 |
T |
|
| Q |
293 |
atatcttatctatgattgtttttatttgccatttcaaacctttttaccgtctttt-ttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaa |
391 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||| |||||| || || ||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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|
| T |
37339985 |
atatgttatctatgattgttttcatttgccattt-aaacctcttcactgtctttttttcaggccatgggtggtaattgaaaaacaagtaggcctcaaaaa |
37340083 |
T |
|
| Q |
392 |
tgtcaaagc |
400 |
Q |
| |
|
| ||||||| |
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|
| T |
37340084 |
tatcaaagc |
37340092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 145 - 400
Target Start/End: Original strand, 37328604 - 37328864
Alignment:
| Q |
145 |
accgtgaa-agtgaatgcttgattcgtcgacttaagtgattattttaacaaggattccaggttgttttcgtggtaattatttttgtaatttaacccacaa |
243 |
Q |
| |
|
|||||||| ||||||||| |||||| || || ||||| || |||||||||| | |||||||||||||| ||| ||||| | |||||||||||||||| |
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|
| T |
37328604 |
accgtgaagagtgaatgcctgattcatcaacctaagttataattttaacaaagcttccaggttgttttggtgataatt----tagtaatttaacccacaa |
37328699 |
T |
|
| Q |
244 |
tactttgaaaaaacttatgaatccgcacggcttggcgagagaattctgcatat---------cttatctatgattgtttttatttgccatttcaaacctt |
334 |
Q |
| |
|
| ||| |||||| | || ||| ||| | || ||| ||||||||||| |||| ||||| ||| |||||| | |||||||||| |||||| |
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|
| T |
37328700 |
tgcttagaaaaaggctttggatctgcaagcctaggcaagagaattctgtatatgtcatgttacttatgtattattgttatcatttgccattg-aaacctc |
37328798 |
T |
|
| Q |
335 |
tttaccgtcttttttcaggccatgggtggtaattgaaaaacaagtgggtctcaaaaatgtcaaagc |
400 |
Q |
| |
|
|| || || ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
37328799 |
ttcactgtattttttcaggccatgggtgataattgaaaaacaagtgggtctcaaaaatatcaaagc |
37328864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 23347142 - 23347220
Alignment:
| Q |
298 |
ttatctatgattgtttttatttgccatttcaaacctttttaccgtcttttttcaggccatgggtggtaattgaaaaaca |
376 |
Q |
| |
|
|||||||||||||| || |||| ||||| |||||| ||||| |||| |||||| |||||||||| ||||||||||||| |
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|
| T |
23347142 |
ttatctatgattgtattgattttgcatttgaaacctctttactgtctcttttcaagccatgggtgttaattgaaaaaca |
23347220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 37328451 - 37328517
Alignment:
| Q |
16 |
atttccaaaagctttgtgactttttgaccgatcaaaactacatcatcacatcttcgactggcaggta |
82 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| ||| ||||||| |||||||| ||||||||||| |
|
|
| T |
37328451 |
attttcaaaagctttgtgactttttgacaaatccaaaacacatcataacatcttcaactggcaggta |
37328517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 163504 - 163472
Alignment:
| Q |
344 |
ttttttcaggccatgggtggtaattgaaaaaca |
376 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
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| T |
163504 |
ttttttcaagccatgggtggtaattgaaaaaca |
163472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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