View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_7 (Length: 408)
Name: NF1101_low_7
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 8e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 148 - 369
Target Start/End: Original strand, 24230686 - 24230913
Alignment:
| Q |
148 |
tattggagtattatgtatcgagtcacaaactaaacttttttgcaatattgatgtgtggctccatcaaaaagtgaattcggttcaacaataaacctatcaa |
247 |
Q |
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| T |
24230686 |
tattggactattatgtaccgagtaacaaactaaacttttttgcaatattgatgtgtggctctatcaaaaagagaattcggttcagcaataaacatatcaa |
24230785 |
T |
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| Q |
248 |
caaagatttaagt--ataaaaaat----agtgatacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttga |
341 |
Q |
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| T |
24230786 |
caaagatgtaaataaataaaaaatagcgagtgatacctgtattttagggggcaggggcaattcttccaccaaagtggctgttggaacttgcaaaacttga |
24230885 |
T |
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| Q |
342 |
gtaccacttgaacaatccggaagctgaa |
369 |
Q |
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| T |
24230886 |
gtaccactcgaacaatctggaagctgaa |
24230913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 24232643 - 24232690
Alignment:
| Q |
361 |
gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacac |
408 |
Q |
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| T |
24232643 |
gaagctgaagagagcatcaacgaaatccttcccagcctcagcatacac |
24232690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 24122148 - 24122195
Alignment:
| Q |
361 |
gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacac |
408 |
Q |
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| T |
24122148 |
gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacac |
24122195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 24132579 - 24132626
Alignment:
| Q |
361 |
gaagctgaagagagcatcaacgaaatccttccccgcttcagcatacac |
408 |
Q |
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| T |
24132579 |
gaagctgaaaagagcatcaacaaaatccttccctgcttcagcatacac |
24132626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 275 - 369
Target Start/End: Complemental strand, 42769611 - 42769517
Alignment:
| Q |
275 |
tacctgtattttagggggcgggggcaattcttccaccaatgtagctcttggaacctgcaaaacttgagtaccacttgaacaatccggaagctgaa |
369 |
Q |
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| T |
42769611 |
tacctgtatgttaggaggcagaggcaatccttccaccgaaggagctcttggaacctgcacaacttgagtaccgcctgaaccatccggaagctgaa |
42769517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 10988890 - 10988844
Alignment:
| Q |
361 |
gaagctgaagagagcatcaacgaaatccttccccgcttcagcataca |
407 |
Q |
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||||||||||||| ||||||||||||||||| | || |||||||||| |
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| T |
10988890 |
gaagctgaagagaacatcaacgaaatccttcactgcctcagcataca |
10988844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 407
Target Start/End: Complemental strand, 28160555 - 28160509
Alignment:
| Q |
361 |
gaagctgaagagagcatcaacgaaatccttccccgcttcagcataca |
407 |
Q |
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| T |
28160555 |
gaagctgaaaagagcaccaacaaaatccttccctgcttcagcataca |
28160509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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