View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1101_low_8 (Length: 391)
Name: NF1101_low_8
Description: NF1101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1101_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 33233483 - 33233680
Alignment:
| Q |
1 |
cactaaaatatttgacaatttttatttatttttacacaaacaatgcataaaaattaaagttttgaaagaaatagcaatcaatggaattggagataaagaa |
100 |
Q |
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| T |
33233483 |
cactaaaatatttgacaatttttatttatttttacacaaacaatgcataaaaattaaagttttgaaagaaatagcaatcaatggaattggagataaagaa |
33233582 |
T |
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| Q |
101 |
gaggggacaatatcaatttcatggaggtacaacacatctcctaatcgaaattaaaatactcaaagatgtattattcattcataagcagccacttgtca |
198 |
Q |
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| T |
33233583 |
gaggggacaatatcaatttcatggaggtacaacacatctcctaatcgaaattaaaatactcaaagatgtattattcattcataagcagccacttgtca |
33233680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 33233703 - 33233797
Alignment:
| Q |
294 |
ttaagtttatgtttgaattaaaaatttatgataaataatcgtattatactttaaacacaccgaaattattttaacaaaacatcttatattcttcg |
388 |
Q |
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| T |
33233703 |
ttaaatttatgtttgaattaaaaatttatgataaataatcgtattatactttaatcacaccgaaattattttaacaaaacatcttatattattcg |
33233797 |
T |
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