View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11020_high_3 (Length: 241)
Name: NF11020_high_3
Description: NF11020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11020_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 38504966 - 38504745
Alignment:
| Q |
2 |
caaacgcagcacacaactcaaaactcacaatctccgttttcccaacttattcgaatgcatgaatgaaaaccaaacgcgctttttcaaataatccaatcta |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504966 |
caaacgcagcacacaactcaaaactcacaatctccgttttcccaacttattcgaatgcatgaatgaaaaccaaacgcgctttttcaaataatccaatcta |
38504867 |
T |
|
| Q |
102 |
aaatcctcactacaatccattccttcaaatttccctcccaattctaaacaaccaaacaaatggcagcttcttcactctgttcctccttcacctccacaac |
201 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38504866 |
aaatcctcactacaatccattccttcaaatttccctcccaattctaaacaaccaaacaaatggcagcttcttcactctgttcctccttcacctccacaac |
38504767 |
T |
|
| Q |
202 |
ttcgcactcgcaacatcgtctt |
223 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
38504766 |
ttcgcactcgcaacatcgtctt |
38504745 |
T |
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