View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11020_low_1 (Length: 388)
Name: NF11020_low_1
Description: NF11020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11020_low_1 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 372
Target Start/End: Complemental strand, 6100582 - 6100227
Alignment:
| Q |
17 |
agtgtgataaacaagcttaccaaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttccatagactaagtaaaatctat |
116 |
Q |
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| T |
6100582 |
agtgtgataaacaagcttaccaaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttccatagactaagtaaaatctat |
6100483 |
T |
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| Q |
117 |
atatagttcaagacacctcatatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6100482 |
atatagttcaagacacctcatatcttctagtaattttatagttcaatacctttgtcttatttaccccattcacctatatttaccatgttttcatgaacac |
6100383 |
T |
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| Q |
217 |
tgaagaaaaataaaagctaggattcataagtataatacatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaaacactaaacacatga |
316 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6100382 |
tgaagaaaaataaaagctaggattcataagtataataaatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaagcactaaacacatga |
6100283 |
T |
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| Q |
317 |
taactatatagttaaagggaataaatactcagcatggagtcctctacgtgacaaaa |
372 |
Q |
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| T |
6100282 |
taactatatagttaaagggaataaatactcagcatggagtcctctacgtgacaaaa |
6100227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 38 - 372
Target Start/End: Original strand, 364231 - 364565
Alignment:
| Q |
38 |
aaaattcttggtctacccttagagttgtgccacatacattgtacatgcattaattttcc-atagactaagtaaaatctatatatagttcaagacacctca |
136 |
Q |
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| T |
364231 |
aaaattcttggtctacctgtagagttgtgccacgtatattatacatgcattaatttttttatagactaagtaaagtctatatatagttcaagacacctca |
364330 |
T |
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| Q |
137 |
tatcttctagtaattttatagttcaatacctttgtcttattta----ccccattcacctatatttaccatgttttcatgaacactgaagaaaaataaaag |
232 |
Q |
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| T |
364331 |
tatcttctagtaattttatagttcaatacctttgtcttatttaattaccccattcacctatatttaccatgttttcatgaacaccgaagaaaaataaaag |
364430 |
T |
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| Q |
233 |
ctaggattcataagtataatacatactcaaaatgaagaccgtagaaaaaggcatgttcatatctacaaaacactaaacacatgataactatatagttaaa |
332 |
Q |
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| T |
364431 |
ttaggattcataagtataataaatactcaaaatgaagaccata-aaaagggcatgttcatatctacaaaacactaaacacatgttaactatatagttaaa |
364529 |
T |
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| Q |
333 |
gggaataaatactcagcatggagtcctctacgtgacaaaa |
372 |
Q |
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||| |||||||| |||||||||||||| |||||||| |
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| T |
364530 |
ggg----aatactcaacatggagtcctctagatgacaaaa |
364565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 28055336 - 28055395
Alignment:
| Q |
106 |
gtaaaatctatatatagttcaagacacctcatatcttctagtaattttatagttcaatac |
165 |
Q |
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| T |
28055336 |
gtaaaatctatatatagttcaagacacctcatatcttatagtgattttatagttcaatac |
28055395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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