View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11020_low_2 (Length: 367)
Name: NF11020_low_2
Description: NF11020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11020_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 49 - 353
Target Start/End: Original strand, 35374501 - 35374805
Alignment:
| Q |
49 |
tccctattttcttcaaacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattctaactcgccttcaaacaatgctga |
148 |
Q |
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| T |
35374501 |
tccctattttcttcacacttcttccccatcataatattggttctgctgtttctcgtactacttatccactggattctaactagccttcaaacaatgctga |
35374600 |
T |
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| Q |
149 |
taaggcacgaagatacgaatacctcatgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatccc |
248 |
Q |
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| T |
35374601 |
taaggcacgaagatacgaatacctcacgtcactattctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcagaaacaccatccc |
35374700 |
T |
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| Q |
249 |
cttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacactc |
348 |
Q |
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| T |
35374701 |
cttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggtacactc |
35374800 |
T |
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| Q |
349 |
cctct |
353 |
Q |
| |
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||||| |
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| T |
35374801 |
cctct |
35374805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 353
Target Start/End: Original strand, 35380949 - 35381059
Alignment:
| Q |
243 |
catccccttctctgtctacactgctaagtatgcaaacgaagaatctctacgtgattgtgttatttgcttggatgagtttgaagacaataatgacattggt |
342 |
Q |
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| T |
35380949 |
catcctctcctccgtctacaacgctaaatatgcacaagaagaatttcaacgtgattgtgttatttgcttgaatgaatttgaagacaatgataccattgga |
35381048 |
T |
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| Q |
343 |
acactccctct |
353 |
Q |
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| T |
35381049 |
acgctccctct |
35381059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 30811863 - 30811986
Alignment:
| Q |
185 |
ctaacgaccaattgcaaacacatgtcgtccacaacttagacgagttggtcataaacaccatccccttctctgtctacactgctaagtatgcaaacgaaga |
284 |
Q |
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||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| |||| |
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| T |
30811863 |
ctaacgaccaactgcaaacacatgtcgttcataacttagacgagttggtcataaataccatctccttctccatctacaccgctaagtatgcaaaagaagc |
30811962 |
T |
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| Q |
285 |
atctctacgtgattgtgttatttg |
308 |
Q |
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|| | |||| | ||||||||||| |
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| T |
30811963 |
atttgcacgttactgtgttatttg |
30811986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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