View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11020_low_4 (Length: 239)
Name: NF11020_low_4
Description: NF11020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11020_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 29341394 - 29341614
Alignment:
| Q |
1 |
taaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29341394 |
taaagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtg |
29341493 |
T |
|
| Q |
101 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29341494 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaata |
29341593 |
T |
|
| Q |
201 |
tattgcttcaagggatgctac |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29341594 |
tattgcttcaagggatgctac |
29341614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 29357423 - 29357644
Alignment:
| Q |
3 |
aagatctcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtgta |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
29357423 |
aagatctcaatgattacctaattatgataccatctaaaattttattttggtgattttataggctctaaggattagcttcaagaaacctatcgacagtgta |
29357522 |
T |
|
| Q |
103 |
actatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatata |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29357523 |
actatttcaggtcataagtttttgggatgcccatttccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagatgttgaatata |
29357622 |
T |
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| Q |
203 |
ttgcttcaagggatgctacaat |
224 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
29357623 |
ttgcttcaagggatgctacaat |
29357644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 44660381 - 44660166
Alignment:
| Q |
9 |
tcaatgattacctaattatgataccatctaaaattttattttggtgattgtgtaggctctaaggattagcttcaagaaacctatcgacagtgtaactatt |
108 |
Q |
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|
|||||||||||||||||| ||| |||||||||||| |||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||| |
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| T |
44660381 |
tcaatgattacctaattaagattttatctaaaattttgctttgctgattgaataggctccaaggattagcttcaagaaacccatcgacagtgtaacaatt |
44660282 |
T |
|
| Q |
109 |
tcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgctt |
208 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||| |
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| T |
44660281 |
tcaggccataagtttttgggatgcccatcaccttgtggtgttttgataactcgtttgaaatacatgaatgcactatctagagatgttgacatcattgctt |
44660182 |
T |
|
| Q |
209 |
caagggatgctacaat |
224 |
Q |
| |
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|||||||||| ||||| |
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| T |
44660181 |
caagggatgccacaat |
44660166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 33 - 224
Target Start/End: Complemental strand, 44683505 - 44683311
Alignment:
| Q |
33 |
catctaaaattttattttggtgattgtgt---aggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttggga |
129 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||||||||| | ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| |
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|
| T |
44683505 |
catctaaaatattgttttggtgatgatgttacaggctctaaaggttagcttcaagaaacctattggcagtgtaactatttcaggtcacaagtttttggga |
44683406 |
T |
|
| Q |
130 |
tgcccatctccttgtggtgttttgataactcgtttgaaatatatcaatgcactatctagagaagttgaatatattgcttcaagggatgctacaat |
224 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||| || | ||| |||||||||| |||| ||||||||||||||||| ||||| |
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| T |
44683405 |
tgcccatctccttgcggtgttgtgataactcgtttgaaatacatgagtgcgatatctagagatgttggcatcattgcttcaagggatgccacaat |
44683311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 44668762 - 44668699
Alignment:
| Q |
101 |
taactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcgttt |
164 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||| |
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| T |
44668762 |
taaccatttcaggccataagtttttgggatgtccaattccttgtggtgttttattaactcgttt |
44668699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 44640488 - 44640386
Alignment:
| Q |
62 |
aggctctaaggattagcttcaagaaacctatcgacagtgtaactatttcaggtcataagtttttgggatgcccatctccttgtggtgttttgataactcg |
161 |
Q |
| |
|
|||||| ||| |||| ||||||||| || || | ||| ||||||| || || ||||||||| ||||||| ||| ||||||||||||||| ||||||| |
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| T |
44640488 |
aggctccaagcattaccttcaagaagcccattggaagtataactatctctggccataagtttctgggatgtccaattccttgtggtgttttattaactcg |
44640389 |
T |
|
| Q |
162 |
ttt |
164 |
Q |
| |
|
||| |
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|
| T |
44640388 |
ttt |
44640386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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