View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11021_low_1 (Length: 599)

Name: NF11021_low_1
Description: NF11021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11021_low_1
NF11021_low_1
[»] chr8 (2 HSPs)
chr8 (31-181)||(12933811-12933961)
chr8 (121-158)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (31-181)||(14177081-14177231)
chr4 (31-181)||(28608644-28608794)
chr4 (120-173)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (151-188)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (151-188)||(796698-796735)
chr6 (151-188)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (151-188)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 12933961 - 12933811
Alignment:
Q  31 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 129  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  12933961 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 12933863  T
Q  130 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 181  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  12933862 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 12933811  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
Q  121 ggttgctccatataaatctcctcttccaaatctccatg 158  Q
    ||||||||||||||||||||||||||||| || |||||    
T  36999974 ggttgctccatataaatctcctcttccaagtcaccatg 36999937  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 14177231 - 14177081
Alignment:
Q  31 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 129  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || || ||||||||||||||||  ||    
T  14177231 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaacc 14177133  T
Q  130 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 181  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  14177132 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 14177081  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 28608644 - 28608794
Alignment:
Q  31 taccactgccttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctcc 129  Q
    ||||| || |||||||| || || |||||||| |  ||||| ||||||||||| |||| ||| | ||||| || || ||| |||||||||||||||  ||    
T  28608644 taccattgtcttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaacc 28608742  T
Q  130 atataaatctcctcttccaaatctccatgaagaaatgcagttttcacatcca 181  Q
    || || ||||| || || ||||||||||||||||||||||| || |||||||    
T  28608743 atgtagatctcttcatctaaatctccatgaagaaatgcagtctttacatcca 28608794  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
Q  120 tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt 173  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||    
T  20706234 tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt 20706182  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
Q  151 tctccatgaagaaatgcagttttcacatccaactgctc 188  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  6692123 tctccatgaagaaatgcagtcttcacatctaactgctc 6692086  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 796698 - 796735
Alignment:
Q  151 tctccatgaagaaatgcagttttcacatccaactgctc 188  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  796698 tctccatgaagaaatgcagtcttcacatctaactgctc 796735  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
Q  151 tctccatgaagaaatgcagttttcacatccaactgctc 188  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  8273129 tctccatgaagaaatgcagtcttcacatctaactgctc 8273092  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
Q  151 tctccatgaagaaatgcagttttcacatccaactgctc 188  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  19944073 tctccatgaagaaatgcagtcttcacatctaactgctc 19944036  T

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