View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11021_low_2 (Length: 483)

Name: NF11021_low_2
Description: NF11021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11021_low_2
NF11021_low_2
[»] chr7 (10 HSPs)
chr7 (1-467)||(25239296-25239762)
chr7 (2-52)||(18233606-18233656)
chr7 (9-53)||(30813820-30813864)
chr7 (9-131)||(8160424-8160546)
chr7 (9-52)||(8239058-8239101)
chr7 (1-51)||(7133287-7133337)
chr7 (9-45)||(21880160-21880196)
chr7 (1-53)||(23930219-23930271)
chr7 (9-45)||(27945049-27945085)
chr7 (8-52)||(29812672-29812716)
[»] chr6 (19 HSPs)
chr6 (2-53)||(7569175-7569226)
chr6 (2-50)||(19602191-19602239)
chr6 (8-52)||(34895042-34895086)
chr6 (1-52)||(6389743-6389794)
chr6 (1-107)||(16766697-16766803)
chr6 (9-52)||(24832596-24832639)
chr6 (1-52)||(34446565-34446616)
chr6 (9-47)||(7996391-7996429)
chr6 (9-47)||(8022372-8022410)
chr6 (1-112)||(9107318-9107429)
chr6 (2-52)||(17168471-17168521)
chr6 (9-47)||(33817957-33817995)
chr6 (9-47)||(34073360-34073398)
chr6 (7-52)||(6299518-6299563)
chr6 (7-52)||(6306328-6306373)
chr6 (1-49)||(7625122-7625170)
chr6 (1-45)||(7977845-7977889)
chr6 (1-45)||(12696324-12696368)
chr6 (9-53)||(20576640-20576684)
[»] chr4 (13 HSPs)
chr4 (1-52)||(24343507-24343558)
chr4 (1-57)||(32910551-32910607)
chr4 (9-47)||(37698720-37698758)
chr4 (1-53)||(20743285-20743337)
chr4 (8-75)||(31243532-31243600)
chr4 (1-48)||(6273944-6273991)
chr4 (1-75)||(7012066-7012141)
chr4 (1-52)||(19230317-19230368)
chr4 (1-75)||(51701258-51701333)
chr4 (9-46)||(56257941-56257978)
chr4 (9-53)||(15659767-15659811)
chr4 (9-53)||(36635332-36635376)
chr4 (1-53)||(46180943-46180995)
[»] chr3 (9 HSPs)
chr3 (9-74)||(8039820-8039886)
chr3 (9-75)||(16192734-16192801)
chr3 (2-53)||(25652038-25652089)
chr3 (9-52)||(8383265-8383308)
chr3 (2-52)||(21211289-21211339)
chr3 (1-42)||(16789668-16789709)
chr3 (7-52)||(52369781-52369826)
chr3 (1-45)||(15796309-15796353)
chr3 (8-52)||(25892467-25892511)
[»] chr2 (10 HSPs)
chr2 (4-72)||(38919209-38919278)
chr2 (1-52)||(6249199-6249250)
chr2 (1-52)||(23354660-23354711)
chr2 (1-57)||(23354998-23355054)
chr2 (8-52)||(25544488-25544532)
chr2 (1-75)||(30563409-30563484)
chr2 (1-51)||(19573978-19574028)
chr2 (9-47)||(23921261-23921299)
chr2 (9-53)||(2415325-2415369)
chr2 (1-45)||(21374714-21374758)
[»] chr8 (6 HSPs)
chr8 (1-75)||(13845234-13845309)
chr8 (9-52)||(3025559-3025602)
chr8 (9-47)||(7658471-7658509)
chr8 (9-47)||(13203649-13203687)
chr8 (1-45)||(4673440-4673484)
chr8 (8-52)||(39820436-39820480)
[»] chr5 (8 HSPs)
chr5 (1-52)||(32630743-32630794)
chr5 (1-112)||(39698541-39698652)
chr5 (8-52)||(25863211-25863255)
chr5 (9-52)||(28588682-28588725)
chr5 (2-52)||(7997174-7997224)
chr5 (7-52)||(5467986-5468031)
chr5 (9-45)||(27932243-27932279)
chr5 (8-52)||(43554528-43554572)
[»] chr1 (11 HSPs)
chr1 (1-59)||(40747774-40747832)
chr1 (11-75)||(25361896-25361961)
chr1 (9-68)||(8010278-8010338)
chr1 (1-52)||(1864888-1864939)
chr1 (9-52)||(36878469-36878512)
chr1 (1-52)||(39101190-39101241)
chr1 (2-52)||(24176375-24176425)
chr1 (1-75)||(42004937-42005006)
chr1 (9-46)||(25452162-25452199)
chr1 (11-75)||(44482240-44482305)
chr1 (9-76)||(17754319-17754387)
[»] scaffold0022 (1 HSPs)
scaffold0022 (9-47)||(90851-90889)
[»] scaffold1528 (1 HSPs)
scaffold1528 (9-76)||(1043-1111)
[»] scaffold0024 (1 HSPs)
scaffold0024 (9-76)||(68225-68293)
[»] scaffold0004 (1 HSPs)
scaffold0004 (9-45)||(92815-92851)


Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 25239762 - 25239296
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgttgtgtcggtgtcggacac--acgtcagtgtccgacaccgagac 98  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||   ||||  ||||||||||||  |||    
T  25239762 gacacggataataatttgagaaaattttataactcagtgtaattataggtgtcatgttgtgtcggtgtcggacattgacgt--gtgtccgacaccaggac 25239665  T
Q  99 acccctaattcgagaagcgtttgtgttttatagaccacaaatatttgcatcttataaaacaagcacttgaattgaacaatacaagcaacattgaggaata 198  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  25239664 acccctaattcgaaaagcgtttgtgctttataaaccacaaatatttgcatcttataaaacaagcacttgaattgaacaatacacgcaacattgaggaata 25239565  T
Q  199 gaaaaggtagttggttggtagagatgccccatatgagacccactcactcactttggtcttttacagaaacaaacacagaaagaagacagacaagaaggtc 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25239564 gaaaaggtagttggttggtagagatgccccatatgagacccactcactcactttggtcttttacagaaacaaacacagaaagaagacagacaagaaggtc 25239465  T
Q  299 cctttggttttcatgtatttgtaaaataaagagacagcacatggcatcttccatttgttattttccagcaaccttttttctctttttgttactggatttt 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25239464 cctttggttttcatgtatttgtaaaataaagagacagcacatggcatctttcatttgttattttccagcaaccttttttctctttttgttactggatttt 25239365  T
Q  399 gcactctactccatcattgaacttaaccttaattatgatcttgaattattggttaattataattctggt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25239364 gcactctactccatcattgaacttaaccttaattatgatcttgaattattggttaattataattctggt 25239296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 18233656 - 18233606
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||| ||||||||||||||   ||||||||||||||||||||||||    
T  18233656 acacagatagtaatttgagaaaatgacataattcagtgtaattataggtgt 18233606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 30813820 - 30813864
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  30813820 taataatttgagaaaattacataattcagtgtaattacaggtgtt 30813864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 8160424 - 8160546
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt-atgttgtgtcggtgtcggacacacgtcagtgtccgacaccgagacacccctaat 107  Q
    ||||||||| ||||||||  |||||| |||||||||||| |||||  | | |||||||||||| ||||   || |||||||||||||||| || ||||||    
T  8160424 taataatttaagaaaattacataatttagtgtaattatatgtgttggtatcgtgtcggtgtcgaacacgtatc-gtgtccgacaccgagatacacctaat 8160522  T
Q  108 tcgagaagcgtttgtgttttatag 131  Q
    || || |||||  ||| |||||||    
T  8160523 tctaggagcgtccgtgctttatag 8160546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 8239101 - 8239058
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||| ||||||| ||||||||||||||||||||| ||||    
T  8239101 taataatttaagaaaatcttataattcagtgtaattatatgtgt 8239058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7133337 - 7133287
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtg 51  Q
    ||||||||| |||||||||||||||   ||||||||||||||| |||||||    
T  7133337 gacacagatgataatttgagaaaatgacataattcagtgtaatcataggtg 7133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 21880160 - 21880196
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||||||||||||||  |||||||||||||||||    
T  21880160 taataatttgagaaaattacataattcagtgtaatta 21880196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 23930219 - 23930271
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    ||||| |||| ||||||||||||||   ||||||||||||||| |||||||||    
T  23930219 gacacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgtt 23930271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 27945049 - 27945085
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||||||||||||||  |||||||||||||||||    
T  27945049 taataatttgagaaaattacataattcagtgtaatta 27945085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 29812716 - 29812672
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||  ||||||| |||||||| ||||||||    
T  29812716 ataataatttgagaaaatgatataatttagtgtaatcataggtgt 29812672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 7569226 - 7569175
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  7569226 acacagataataatttgagaaaattacataattcagtgtaattataggtgtt 7569175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 19602239 - 19602191
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggt 50  Q
    |||| |||||||||||||||||||  |||||||||||||||| ||||||    
T  19602239 acactgataataatttgagaaaatgatataattcagtgtaatcataggt 19602191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 34895086 - 34895042
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||| || ||||||||||||| ||||||||    
T  34895086 ataataatttgagaaaattatacaattcagtgtaatcataggtgt 34895042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6389743 - 6389794
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||| |||||||||||||||||||  ||||||| |||||||| ||||||||    
T  6389743 gacacggataataatttgagaaaatgatataatttagtgtaatcataggtgt 6389794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16766697 - 16766803
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgtcggacacacgtcagtgtccgacaccgagaca 99  Q
    ||||||| ||||||||||| |||||   ||||||||||||||||| | ||||   ||| ||||||||||||||||||   | ||||||||||||| ||||    
T  16766697 gacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacac-gtgtccgacaccgggaca 16766795  T
Q  100 cccctaat 107  Q
    | ||||||    
T  16766796 cgcctaat 16766803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 24832596 - 24832639
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||    
T  24832596 taataatttgagaaaatcttataatttagtgtaattatatgtgt 24832639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 34446565 - 34446616
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||| |||||||||||||||||||   ||||||||||||||| ||||||||    
T  34446565 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgt 34446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 7996429 - 7996391
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  7996429 taataatttgagaaaatcatataattcagtgtaattata 7996391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 8022372 - 8022410
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  8022372 taataatttgagaaaatcatataattcagtgtaattata 8022410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9107429 - 9107318
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgtcggacac-acgtcagtgtccgacaccgagac 98  Q
    ||||||| ||||||||||| |||||   | ||||||||||||||| | ||||   ||| ||||||||||||||||| ||||  ||||||||||||| |||    
T  9107429 gacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacgt--gtgtccgacaccgggac 9107332  T
Q  99 acccctaattcgag 112  Q
    || |||||| ||||    
T  9107331 acacctaatccgag 9107318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 17168521 - 17168471
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||| |||||||||||||||||||  ||||||| |||||||| ||||||||    
T  17168521 acactgataataatttgagaaaatgatataatttagtgtaataataggtgt 17168471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 33817957 - 33817995
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  33817957 taataattggagaaaatttcataattcagtgtaattata 33817995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 34073398 - 34073360
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  34073398 taataatttgagaaaatctcataattcagtgtaattata 34073360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 6299518 - 6299563
Alignment:
Q  7 gataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||    
T  6299518 gataataatttgagaaaatgatataattcaatgtaatgataggtgt 6299563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 6306328 - 6306373
Alignment:
Q  7 gataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||||  ||||||||| |||||| ||||||||    
T  6306328 gataataatttgagaaaatgatataattcaatgtaatgataggtgt 6306373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7625122 - 7625170
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattatagg 49  Q
    ||||| |||||||||||||||||||  ||||||| ||| ||||||||||    
T  7625122 gacacggataataatttgagaaaatgatataatttagtataattatagg 7625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7977889 - 7977845
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  7977889 gacacagctaataatttgaaaaaattacataattcagtgtaatta 7977845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12696324 - 12696368
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  12696324 gacacagctaataatttgaaaaaattacataattcagtgtaatta 12696368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 20576684 - 20576640
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||||||| |||||||||  ||||||||||||||||||| |||||    
T  20576684 taataattcgagaaaattgcataattcagtgtaattataagtgtt 20576640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24343507 - 24343558
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||||||||    
T  24343507 gacacggataataatttgagaaaattacataattcagtgtaattataggtgt 24343558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32910551 - 32910607
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgt 57  Q
    ||||| |||||||||||||||||||   |||||||||||||||||| ||||||||||    
T  32910551 gacacggataataatttgagaaaatgacataattcagtgtaattatgggtgttatgt 32910607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 37698720 - 37698758
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  37698720 taataatttgagaaaattatataattcagtgtaattata 37698758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20743337 - 20743285
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    ||||| |||||||||||||||||||   ||||||||||||||| |||||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgtt 20743285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 31243600 - 31243532
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgttatgt-tgtgtcggtgtcggacac 75  Q
    ||||||||||||||||||   ||||||||||||||| |||||||| ||||  |||| ||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttggtgtcggacac 31243532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6273944 - 6273991
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattatag 48  Q
    |||||||| ||||||||||||||||  ||||||| |||||||||||||    
T  6273944 gacacagacaataatttgagaaaatgatataatttagtgtaattatag 6273991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 7012066 - 7012141
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgtcggacac 75  Q
    ||||| |||||||||||||||||||   |||||||||||| || |||||| |   |||||||||||||||||||||    
T  7012066 gacaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcggtgtcggacac 7012141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19230368 - 19230317
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||| ||||||||||||||||||||   |||||||| |||||||||||||||    
T  19230368 gacatagataataatttgagaaaataacataattcaatgtaattataggtgt 19230317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 51701258 - 51701333
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacac 75  Q
    ||||||| ||||||||||| ||||||  |||||| |||||||||| | |||||| ||| |||||||||||| ||||    
T  51701258 gacacagctaataatttgaaaaaattacataattgagtgtaattacaagtgttagtgtcgtgtcggtgtcgaacac 51701333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 56257941 - 56257978
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattat 46  Q
    |||||||||||||||||  |||||||||||||||||||    
T  56257941 taataatttgagaaaatcatataattcagtgtaattat 56257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 15659811 - 15659767
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    ||||||||||||||||| | ||||||| ||||||||||| |||||    
T  15659811 taataatttgagaaaatctcataattcggtgtaattatatgtgtt 15659767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 36635332 - 36635376
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||||||||||||||||   ||||||||||||||||||| |||||    
T  36635332 taataatttgagaaaatcacataattcagtgtaattatatgtgtt 36635376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 46180995 - 46180943
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||||||| ||||||||||||||||   ||||||||||||||| ||| |||||    
T  46180995 gacacagacaataatttgagaaaataacataattcagtgtaatcatatgtgtt 46180943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 8039886 - 8039820
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgtcggaca 74  Q
    |||||||||||||||||| |||||||||||||||||||| ||||   ||| ||||||||||||||||    
T  8039886 taataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggaca 8039820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 16192801 - 16192734
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt-atgttgtgtcggtgtcggacac 75  Q
    |||||||||||||||||   ||||||||||||||||||| ||||| |||| ||||||||||| |||||    
T  16192801 taataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtcagacac 16192734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 25652089 - 25652038
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||| |||||||||||||||||||  |||||||||||||| |||||||||||    
T  25652089 acacggataataatttgagaaaatgatataattcagtgtagttataggtgtt 25652038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 8383265 - 8383308
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||  |||||||||||||||||||| ||||    
T  8383265 taataatttgagaaaatcatataattcagtgtaattataagtgt 8383308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 21211289 - 21211339
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||| ||||||||||||||||||||  ||| |||||||||||||| |||||    
T  21211289 acacggataataatttgagaaaattacatagttcagtgtaattatgggtgt 21211339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16789709 - 16789668
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaa 42  Q
    |||||||||||||||||||||||||   ||||||||||||||    
T  16789709 gacacagataataatttgagaaaatgacataattcagtgtaa 16789668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 52369781 - 52369826
Alignment:
Q  7 gataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||||  |||||||| |||||| ||||||||    
T  52369781 gataataatttgagaaaattacataattcaatgtaatcataggtgt 52369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 15796353 - 15796309
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||| ||||||||||| |||||  ||||||||||||||||||    
T  15796353 gacacagttaataatttgaaaaaatcatataattcagtgtaatta 15796309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25892467 - 25892511
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||| |||||||  |||||||||||||||| ||||||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgt 25892511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 38919209 - 38919278
Alignment:
Q  4 acagataataatttgagaaaattttataattcagtgtaattataggtgttatgtt-gtgtcggtgtcgga 72  Q
    |||||||||||||||||||||| ||||| || |||||||| ||||||||  |||| ||||||||||||||    
T  38919209 acagataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcgga 38919278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6249199 - 6249250
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||| ||||||||||||||||||| ||||||||||||||| | ||||||||    
T  6249199 gacaccgataataatttgagaaaatattataattcagtgtattcataggtgt 6249250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23354711 - 23354660
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||||||||||  ||||||| |||||||| ||||||||    
T  23354711 gacacagataataatttgagaaaatgatataatttagtgtaatcataggtgt 23354660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23355054 - 23354998
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgt 57  Q
    |||||||||||||||||||||||||  ||||||| |||| ||| |||||||| ||||    
T  23355054 gacacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgt 23354998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25544488 - 25544532
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||    
T  25544488 ataataatttgagaaaatgatataattcagtgtaatcataggtgt 25544532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 30563409 - 30563484
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgt-tgtgtcggtgtcggacac 75  Q
    ||||| |||||||||||||||||||   |||||||| ||||| |||||||||| |||  ||||| |||||||||||    
T  30563409 gacacggataataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcagtgtcggacac 30563484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19573978 - 19574028
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtg 51  Q
    ||||| ||||||||||| |||||||   |||||||||||||||||||||||    
T  19573978 gacaccgataataatttaagaaaataacataattcagtgtaattataggtg 19574028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 23921261 - 23921299
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  23921261 taataatttgagaaaattacataattcagtgtaattata 23921299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 2415325 - 2415369
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtt 53  Q
    |||||||||||||||||| ||||||| ||||||| |||| |||||    
T  2415325 taataatttgagaaaattatataattaagtgtaactatatgtgtt 2415369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21374758 - 21374714
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  21374758 gacacagctaataatttgaaaaaattacataattcagtgtaatta 21374714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 13845234 - 13845309
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgt-tgtgtcggtgtcggacac 75  Q
    |||||| ||||||||||||||||||  ||||||| || ||||| ||||||||  ||| ||||||||||||||||||    
T  13845234 gacacaaataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgtcggtgtcggacac 13845309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 3025559 - 3025602
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  3025559 taataatttgagaaaatcacataattcagtgtaattataggtgt 3025602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 7658471 - 7658509
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  7658471 taataatttgagaaaattacataattcagtgtaattata 7658509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 13203649 - 13203687
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  13203649 taataatttgagaaaattacataattcagtgtaattata 13203687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4673484 - 4673440
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||||||||||||||| |||||  || |||||||||||||||    
T  4673484 gacacagataataatttgaaaaaatcataaaattcagtgtaatta 4673440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 39820436 - 39820480
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||  ||||||| |||||||| ||||||||    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgt 39820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32630794 - 32630743
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||| ||||    
T  32630794 gacaccgataataatttgagaaaattatataattcaatgtaattatatgtgt 32630743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 39698541 - 39698652
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacacacgtca-gtgtccgacaccgagac 98  Q
    ||||||| ||||||||||| |||||   ||||||||||||||||| | |||| | ||| |||||||||||||||||  | || || ||||||||||||||    
T  39698541 gacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgtcggtgtcggacac--gacatgtatccgacaccgagac 39698638  T
Q  99 acccctaattcgag 112  Q
    || |||||| ||||    
T  39698639 acgcctaatccgag 39698652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 25863211 - 25863255
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgt 25863255  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 28588725 - 28588682
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  28588725 taataatttgagaaaatcacataattcagtgtaattataggtgt 28588682  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 7997224 - 7997174
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||| |||||||||||||||||||  |||||| ||||||||||||| ||||    
T  7997224 acacggataataatttgagaaaatgatataatacagtgtaattataagtgt 7997174  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 5468031 - 5467986
Alignment:
Q  7 gataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||| |||||   ||||||||||||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgt 5467986  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 27932243 - 27932279
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||||||||||||||  |||||||||||||||||    
T  27932243 taataatttgagaaaattacataattcagtgtaatta 27932279  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 43554528 - 43554572
Alignment:
Q  8 ataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||||||||||||||  ||||||| |||||||| ||||||||    
T  43554528 ataataatttgagaaaatgatataatttagtgtaatcataggtgt 43554572  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40747832 - 40747774
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgttg 59  Q
    ||||| |||||||||||||||||||   |||||||| ||||||||||||||| ||||||    
T  40747832 gacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttg 40747774  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 25361896 - 25361961
Alignment:
Q  11 ataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacac 75  Q
    |||||||||||||||   ||||||||||||||||||| |||| | ||| |||||||||||||||||    
T  25361896 ataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtcggacac 25361961  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 8010338 - 8010278
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgt 68  Q
    ||||||||||| |||||| ||||||||||| |||||||| ||||  |||||||||||||||    
T  8010338 taataatttgaaaaaattatataattcagtataattataagtgtcgatgttgtgtcggtgt 8010278  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 1864939 - 1864888
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    ||||||| |||||||||||||||||   ||||||||||||||||||| ||||    
T  1864939 gacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgt 1864888  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 36878469 - 36878512
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  36878469 taataatttgagaaaatcacataattcagtgtaattataggtgt 36878512  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39101241 - 39101190
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||||| ||||||||||||||||||   |||||| |||||||||||||||||    
T  39101241 gacacatataataatttgagaaaataacataattaagtgtaattataggtgt 39101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 24176425 - 24176375
Alignment:
Q  2 acacagataataatttgagaaaattttataattcagtgtaattataggtgt 52  Q
    |||| |||||||||||||||||||   || |||||||||||||||||||||    
T  24176425 acaccgataataatttgagaaaataacatcattcagtgtaattataggtgt 24176375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 42005006 - 42004937
Alignment:
Q  1 gacacagataataatttgagaaaattttataattcagtgtaattataggtgttatgttgtgtcggtgtcggacac 75  Q
    ||||| |||||||||||||||||||   |||||| |||||||| |||||     |||||||||||||||||||||    
T  42005006 gacacggataataatttgagaaaatgacataatttagtgtaatcatagg-----tgttgtgtcggtgtcggacac 42004937  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 25452199 - 25452162
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattat 46  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  25452199 taataatttgagaaaatctcataattcagtgtaattat 25452162  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 44482240 - 44482305
Alignment:
Q  11 ataatttgagaaaattttataattcagtgtaattataggtgt-tatgttgtgtcggtgtcggacac 75  Q
    |||||||||||||||   ||||||||||||||||||| ||||   ||| |||||||||||||||||    
T  44482240 ataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtcggacac 44482305  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 17754319 - 17754387
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacaca 76  Q
    ||||||||||| ||||||  |||||||||||||| |||| |||| | ||| |||||||||| |||||||    
T  17754319 taataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacaca 17754387  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 90851 - 90889
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattata 47  Q
    |||||||||||||||||  ||||||||||||||||||||    
T  90851 taataatttgagaaaatcatataattcagtgtaattata 90889  T

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Target: scaffold1528 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 1043 - 1111
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacaca 76  Q
    ||||||||||| ||||||  |||||||||||||| |||| |||| | ||| |||||||||| |||||||    
T  1043 taataatttgaaaaaattacataattcagtgtaactatatgtgtcagtgtggtgtcggtgttggacaca 1111  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 68293 - 68225
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaattataggtgtta-tgttgtgtcggtgtcggacaca 76  Q
    |||||||||||||||||  ||||||| ||| ||||||||||||| | ||| || ||||||||| |||||    
T  68293 taataatttgagaaaatcatataatttagtataattataggtgtcagtgtcgtatcggtgtcgaacaca 68225  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 92815 - 92851
Alignment:
Q  9 taataatttgagaaaattttataattcagtgtaatta 45  Q
    ||||||||||||||||||  |||||||||||||||||    
T  92815 taataatttgagaaaattacataattcagtgtaatta 92851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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