View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11021_low_3 (Length: 420)

Name: NF11021_low_3
Description: NF11021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11021_low_3
NF11021_low_3
[»] chr2 (4 HSPs)
chr2 (102-313)||(18889693-18889905)
chr2 (335-420)||(18889621-18889699)
chr2 (1-36)||(18889958-18889993)
chr2 (372-420)||(21782848-21782896)
[»] chr4 (6 HSPs)
chr4 (109-269)||(21842318-21842478)
chr4 (109-269)||(21898181-21898341)
chr4 (1-36)||(21842844-21842879)
chr4 (1-36)||(21898707-21898742)
chr4 (311-350)||(21842241-21842280)
chr4 (311-350)||(21898104-21898143)
[»] chr6 (3 HSPs)
chr6 (359-420)||(8805602-8805663)
chr6 (362-420)||(7086766-7086824)
chr6 (372-417)||(677818-677863)
[»] chr1 (3 HSPs)
chr1 (370-420)||(2896151-2896201)
chr1 (372-420)||(6415031-6415079)
chr1 (376-420)||(36878446-36878490)
[»] chr7 (1 HSPs)
chr7 (360-420)||(26733273-26733333)
[»] chr5 (1 HSPs)
chr5 (372-420)||(27144444-27144492)


Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 102 - 313
Target Start/End: Complemental strand, 18889905 - 18889693
Alignment:
Q  102 aattgggttctttaatgagaaattttagactggttaatgctgctacgggcacggggaagactattgcatacctggctccaataattcatcacttgcagag 201  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18889905 aattgggttctttaatgagaaaatttagactggttaatgctgctactggcacggggaagactattgcatacctggctccaataattcatcacttgcagag 18889806  T
Q  202 ttatgataagagaattcagcgctccgatggaacatttggtgtg-tgttattattcttttcaatactattattttatacttaggtaccattgtgtcattgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18889805 ttatgataagagaattcagcgctccgatggaacatttggtgtgttgttattgttcttttcaatactattattttatacttaagtaccattgtgtcattgc 18889706  T
Q  301 ttttatttacttc 313  Q
    ||||||| |||||    
T  18889705 ttttattcacttc 18889693  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 420
Target Start/End: Complemental strand, 18889699 - 18889621
Alignment:
Q  335 tcacttctattgtttgtacgcacgaacaccagacccaacacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    |||||||||||||||||||||||||||||||||| | |||| |||||       |||||   ||||||||||||||||||||||||    
T  18889699 tcacttctattgtttgtacgcacgaacaccagacacgacacggacac-------gcgacgccgctaataaattgagaaaatcacat 18889621  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 18889993 - 18889958
Alignment:
Q  1 ctattcctgttgttctctctggtcgtcatgcgtatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  18889993 ctattcctgttgttctctctggtcgtcatgcgtatc 18889958  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 21782896 - 21782848
Alignment:
Q  372 acacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    ||||| ||||||||||| ||||| ||||||||| |||||||||||||||    
T  21782896 acacaaacactgacacgccgacactgctaataatttgagaaaatcacat 21782848  T

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Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 21842478 - 21842318
Alignment:
Q  109 ttctttaatgagaaattttagactggttaatgctgctacgggcacggggaagactattgcatacctggctccaataattcatcacttgcagagttatgat 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21842478 ttctttaatgagaaaatttagactggttaatgctgctacgggcacagggaagactattgcatacctggctccgataattcatcacttgcagagttatgat 21842379  T
Q  209 aagagaattcagcgctccgatggaacatttggtgtgtgttattattcttttcaatactatt 269  Q
    |||||| ||||||||||||||||||||||||||| |||||||| || ||||||| ||||||    
T  21842378 aagagagttcagcgctccgatggaacatttggtgagtgttatttttgttttcaacactatt 21842318  T

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Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 21898341 - 21898181
Alignment:
Q  109 ttctttaatgagaaattttagactggttaatgctgctacgggcacggggaagactattgcatacctggctccaataattcatcacttgcagagttatgat 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21898341 ttctttaatgagaaaatttagactggttaatgctgctacgggcacagggaagactattgcatacctggctccgataattcatcacttgcagagttatgat 21898242  T
Q  209 aagagaattcagcgctccgatggaacatttggtgtgtgttattattcttttcaatactatt 269  Q
    |||||| ||||||||||||||||||||||||||| |||||||| || ||||||| ||||||    
T  21898241 aagagagttcagcgctccgatggaacatttggtgagtgttatttttgttttcaacactatt 21898181  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21842879 - 21842844
Alignment:
Q  1 ctattcctgttgttctctctggtcgtcatgcgtatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21842879 ctattcctgttgttctctctggtcgtcatgcgtatc 21842844  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21898742 - 21898707
Alignment:
Q  1 ctattcctgttgttctctctggtcgtcatgcgtatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21898742 ctattcctgttgttctctctggtcgtcatgcgtatc 21898707  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 21842280 - 21842241
Alignment:
Q  311 ttcacctatttgttcagcttctcatcacttctattgtttg 350  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  21842280 ttcacctatttgttcagcttctcgtcacttctgttgtttg 21842241  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 350
Target Start/End: Complemental strand, 21898143 - 21898104
Alignment:
Q  311 ttcacctatttgttcagcttctcatcacttctattgtttg 350  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  21898143 ttcacctatttgttcagcttctcgtcacttctgttgtttg 21898104  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 8805663 - 8805602
Alignment:
Q  359 aacaccagacccaacacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    |||||||||| | |||||||||| |||||| || || ||||||||| |||||||||||||||    
T  8805663 aacaccagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacat 8805602  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 7086766 - 7086824
Alignment:
Q  362 accagacccaacacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    ||||||| | |||||||||| |||||| || || ||||||||| |||||||||||||||    
T  7086766 accagacacgacacagacaccgacacgtcggcactgctaataatttgagaaaatcacat 7086824  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 677818 - 677863
Alignment:
Q  372 acacagacactgacacggcgacattgctaataaattgagaaaatca 417  Q
    ||||||||||||||||| ||||| || |||||| ||||||||||||    
T  677818 acacagacactgacacgccgacactgttaataatttgagaaaatca 677863  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 2896201 - 2896151
Alignment:
Q  370 caacacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    |||||| |||||||||||| |||||  |||||||| |||||||||||||||    
T  2896201 caacacggacactgacacgccgacaccgctaataatttgagaaaatcacat 2896151  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 6415079 - 6415031
Alignment:
Q  372 acacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    |||| |||||||||||| |||||| |||||| | |||||||||||||||    
T  6415079 acacggacactgacacgccgacatcgctaattatttgagaaaatcacat 6415031  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 420
Target Start/End: Original strand, 36878446 - 36878490
Alignment:
Q  376 agacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    ||||||||||||| |||||  |||||||| |||||||||||||||    
T  36878446 agacactgacacgccgacaccgctaataatttgagaaaatcacat 36878490  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 26733273 - 26733333
Alignment:
Q  360 acaccagacccaacacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    ||||||||| | |||| |||||||||||| |||||  |||||||| |||| ||||||||||    
T  26733273 acaccagacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacat 26733333  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 27144444 - 27144492
Alignment:
Q  372 acacagacactgacacggcgacattgctaataaattgagaaaatcacat 420  Q
    ||||||||||||||||| |||||  |||||||| ||||| |||||||||    
T  27144444 acacagacactgacacgccgacaccgctaataatttgaggaaatcacat 27144492  T

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