View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11021_low_4 (Length: 389)

Name: NF11021_low_4
Description: NF11021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11021_low_4
NF11021_low_4
[»] chr7 (7 HSPs)
chr7 (36-379)||(17743704-17744047)
chr7 (36-379)||(17734464-17734807)
chr7 (36-379)||(16720480-16720823)
chr7 (36-379)||(17697494-17697837)
chr7 (36-379)||(17716413-17716756)
chr7 (36-379)||(16729353-16729696)
chr7 (36-379)||(17706425-17706768)
[»] chr8 (2 HSPs)
chr8 (93-150)||(21465819-21465876)
chr8 (71-138)||(9693235-9693302)
[»] chr4 (1 HSPs)
chr4 (87-138)||(37147601-37147652)
[»] chr3 (6 HSPs)
chr3 (87-146)||(47398188-47398247)
chr3 (90-141)||(5155454-5155505)
chr3 (87-134)||(46490225-46490272)
chr3 (90-140)||(46543301-46543351)
chr3 (225-290)||(46497386-46497451)
chr3 (81-141)||(51942277-51942337)
[»] chr2 (2 HSPs)
chr2 (87-136)||(20143701-20143750)
chr2 (87-136)||(20169760-20169809)


Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 17744047 - 17743704
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17744047 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 17743948  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  17743947 ttgacgtaagacaagcaagggccaccagcacgagccccgtcggagagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcag 17743848  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17743847 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgtt 17743748  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  17743747 cttttcattgagtttttgattggataacaagtgtttggtgatgt 17743704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 17734807 - 17734464
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17734807 gttgatgaaatcaacagcagcaagagtcgctttgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgattgttcaacccacacacca 17734708  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||| ||||| |||||| ||||| |   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734707 ttgacgtgagacaggcaaggaccaccggcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 17734608  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17734607 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 17734508  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  17734507 cttttcattgagtttttgattggataacaagtgtttggtgatgt 17734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 16720823 - 16720480
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    |||||||||||||||||||| || ||  |||| |||||||||| |||| |||||||||||||||||||||||||||| ||  | ||||||||||||||||    
T  16720823 gttgacgaaatcaacagcagcaaaagcagctttgaaatcagtattcataagttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacacca 16720724  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16720723 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 16720624  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  16720623 actggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgtt 16720524  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    || ||| |||||||||||||||||||| ||||||||||||||||    
T  16720523 ctcttctttgagtttttgattggataacaagtgtttggtgatgt 16720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 17697837 - 17697494
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    |||||||||||||||||||| || ||  |||| |||||||||| |||| |||||||||||||||||||||||||||| ||  | ||||||||||||||||    
T  17697837 gttgacgaaatcaacagcagcaaaagcagctttgaaatcagtattcataagttgtttgaaggaaggttgaagaggaattgtctgttcaacccacacacca 17697738  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17697737 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 17697638  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||    
T  17697637 actggagaaaggagagaagttgtttttgagtgggaccctcggagccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgtt 17697538  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    || ||| |||||||||||||||||||| ||||||||||||||||    
T  17697537 ctcttctttgagtttttgattggataacaagtgtttggtgatgt 17697494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 17716756 - 17716413
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    |||||||||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17716756 gttgacgaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 17716657  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||||||||||||||||||||||||   |||| || |||||||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||| |    
T  17716656 ttgacgtaagacaagcaagggccaccagcgggagcgccatcggagagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctg 17716557  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||    
T  17716556 actggaggaaggagagaagttgtttttgagtgggaccctcggagccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacatt 17716457  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    |||||| |||||||||||||||||||| ||||||||||||||||    
T  17716456 cttttctttgagtttttgattggataacaagtgtttggtgatgt 17716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 16729696 - 16729353
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    ||||| |||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  16729696 gttgaggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 16729597  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||||||||||||||||||||||||   |||  || |||||||||||||||||||| ||| ||||| |||||||||||||||||||||  |||||||    
T  16729596 ttgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcag 16729497  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16729496 actggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgtt 16729397  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||    
T  16729396 cttttctttgagttcttgattggataacaagtgtttggtgatgt 16729353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 379
Target Start/End: Complemental strand, 17706768 - 17706425
Alignment:
Q  36 gttgacgaaatcaacagcagaaagagtcgcttcgaaatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacca 135  Q
    ||||| |||||||||  ||| |||||| ||||  |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  17706768 gttgaggaaatcaacttcagcaagagtagctttaaaatcagtagtcataagttgtttaaaggaaggttgaagaggaagtgattgttcaacccacacacca 17706669  T
Q  136 ttgacgtaagacaagcaagggccaccagtacgagccccgtcggagagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcag 235  Q
    ||||||||||||||||||||||||||||   |||  || |||||||||||||||||||| ||| ||||| |||||||||||||||||||||  |||||||    
T  17706668 ttgacgtaagacaagcaagggccaccagcgggagtgccatcggagagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcag 17706569  T
Q  236 actggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgtt 335  Q
    |||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17706568 actggaggaaggagagaagttgtttttgagtgggacccttggagctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgtt 17706469  T
Q  336 cttttcattgagtttttgattggataataagtgtttggtgatgt 379  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||    
T  17706468 cttttctttgagttcttgattggataacaagtgtttggtgatgt 17706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 21465819 - 21465876
Alignment:
Q  93 gaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacgtaagacaag 150  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||||||| ||| ||||    
T  21465819 gaaggaaggttgaagagaaagtgattgttcaacccacataccattgacgaaagccaag 21465876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 9693235 - 9693302
Alignment:
Q  71 aatcagtagtcatgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattg 138  Q
    ||||||||| ||||  || |||||||||||||||||||| ||| | ||| || |||||||||||||||    
T  9693235 aatcagtagacatggtttctttgaaggaaggttgaagagaaagggttttctctacccacacaccattg 9693302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 37147652 - 37147601
Alignment:
Q  87 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattg 138  Q
    ||||||||||||| ||||||||| |||||||| ||||| |||||||||||||    
T  37147652 ttgtttgaaggaatgttgaagagaaagtgattgttcaatccacacaccattg 37147601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 47398188 - 47398247
Alignment:
Q  87 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacgtaaga 146  Q
    ||||||||||||||||||||||| ||| | || |||||||||||| ||||||||| ||||    
T  47398188 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccacacgccattgacgaaaga 47398247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 5155505 - 5155454
Alignment:
Q  90 tttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacg 141  Q
    |||||||||||||||||||| ||| | || ||||||||| ||||||||||||    
T  5155505 tttgaaggaaggttgaagagaaagggtttgttcaacccatacaccattgacg 5155454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 46490272 - 46490225
Alignment:
Q  87 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacacc 134  Q
    ||||||||||||||||||||||| ||| | |||||| |||||||||||    
T  46490272 ttgtttgaaggaaggttgaagagaaagggttttttccacccacacacc 46490225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 46543351 - 46543301
Alignment:
Q  90 tttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgac 140  Q
    |||||||||| |||||| || |||||||| ||||||||| |||||||||||    
T  46543351 tttgaaggaatgttgaaaagtaagtgattgttcaacccatacaccattgac 46543301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
Q  225 ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 290  Q
    ||||||||  || |||||||||  ||||||||| | ||||||||| ||||||||||| ||||||||    
T  46497451 ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat 46497386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 51942337 - 51942277
Alignment:
Q  81 catgagttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccattgacg 141  Q
    ||||| ||||||||||||||||||||||| ||| | |||||| | ||| ||||||| ||||    
T  51942337 catgatttgtttgaaggaaggttgaagagaaagggttttttctatccatacaccatcgacg 51942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 20143750 - 20143701
Alignment:
Q  87 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccat 136  Q
    ||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  20143750 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20143701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 20169760 - 20169809
Alignment:
Q  87 ttgtttgaaggaaggttgaagaggaagtgatttttcaacccacacaccat 136  Q
    ||||||||||||||||||||||| ||| | || ||||||||| |||||||    
T  20169760 ttgtttgaaggaaggttgaagagaaagggtttgttcaacccatacaccat 20169809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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