View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_high_1 (Length: 730)
Name: NF11022_high_1
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 172 - 720
Target Start/End: Original strand, 48114963 - 48115516
Alignment:
| Q |
172 |
tgaaccgtgaattgagtgatctgatagtagtaatatgataacaaaggcggtggctatccaccacttatggactaaacatctacaacgttgtatgattggt |
271 |
Q |
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| T |
48114963 |
tgaaccgtaatttaagtgatcagatagtagtaatatgataacaaaggcggtggctatccaccacttatggactaaacatctcaaacgttgtatgattggt |
48115062 |
T |
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| Q |
272 |
tcgataatcgtgaactgaacggattttgaataaagctcgatattgaacctatctcaacttttacaaaaacctaaatgtaaaatgtgaattcttcttttct |
371 |
Q |
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| T |
48115063 |
tcgataatcgtgaattaaacggattttgaataaagctcgatattgaacctatctcaacttttacaaaaacctacatgtaaaatgagaattcttctttgct |
48115162 |
T |
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| Q |
372 |
tccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaaacagaat-aaaaag |
470 |
Q |
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| T |
48115163 |
tccatactcttattttcatgtcctatcttattcaatgtgtttctcttaactgttatataaaacatcttacttttcttctcaatgaaacagaataaaaaag |
48115262 |
T |
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| Q |
471 |
atttaaagctatatgagttggacagaaaatccatgtgactgtattccttattgtttgcc----taagtaagtaattcggtcattattcctaggtactctg |
566 |
Q |
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| T |
48115263 |
atttaaagctatatgagttggacagaaaatccatgtgactgtattccctattgtttgcctaagtaagtaagtaattcggtcattattcctaggtactctg |
48115362 |
T |
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| Q |
567 |
aatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaacaataccatggatct |
666 |
Q |
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| T |
48115363 |
aatttcttcttcctcacatgttttgtccatctttcgataccaaacaaaccactaaataaaatctcaatcattaaccaaatcaaaacaataccatggatct |
48115462 |
T |
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| Q |
667 |
accacacgattcacataattatatgtctttacttgccacgatcaatattctctg |
720 |
Q |
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| T |
48115463 |
accacacgattcacataattatatgtcttttcttgccacgatcaatattctctg |
48115516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 48114771 - 48114906
Alignment:
| Q |
18 |
atgacaacaacattttacggatcacaatcctattgagttattagaattgaggtgcaa--------actattacaaaactggttagtaaagcaaaaattat |
109 |
Q |
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| T |
48114771 |
atgacaacaacattttacggatcacaatcctattgagttattagaattggggtgcacttaactcgactattacaaaactggttagtaaagcaaaaattat |
48114870 |
T |
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| Q |
110 |
acctatttataaatttatgtttatgacatatttcat |
145 |
Q |
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| T |
48114871 |
acctatttttaaatttatgtttatgacatatttcat |
48114906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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