View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11022_high_11 (Length: 452)

Name: NF11022_high_11
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11022_high_11
NF11022_high_11
[»] chr8 (15 HSPs)
chr8 (1-440)||(1969082-1969521)
chr8 (1-421)||(2007519-2007939)
chr8 (1-419)||(2004141-2004559)
chr8 (1-413)||(1965140-1965552)
chr8 (6-412)||(2011143-2011549)
chr8 (14-412)||(2436895-2437287)
chr8 (21-393)||(1963490-1963862)
chr8 (14-412)||(2017931-2018329)
chr8 (14-328)||(2014632-2014946)
chr8 (42-109)||(3770193-3770260)
chr8 (58-184)||(10201811-10201937)
chr8 (58-184)||(10208884-10209010)
chr8 (42-109)||(3707935-3708002)
chr8 (26-108)||(33005106-33005188)
chr8 (326-363)||(23269096-23269133)
[»] chr1 (2 HSPs)
chr1 (14-413)||(5902659-5903058)
chr1 (14-413)||(5906143-5906542)
[»] chr4 (1 HSPs)
chr4 (326-397)||(5890603-5890674)
[»] scaffold0288 (1 HSPs)
scaffold0288 (59-100)||(3516-3557)
[»] chr6 (14 HSPs)
chr6 (59-100)||(4461417-4461458)
chr6 (60-100)||(4622436-4622476)
chr6 (59-100)||(4557419-4557460)
chr6 (59-100)||(4592525-4592566)
chr6 (59-98)||(4490152-4490191)
chr6 (62-100)||(4266966-4267004)
chr6 (59-105)||(4299618-4299664)
chr6 (59-105)||(4626240-4626286)
chr6 (62-99)||(4493250-4493287)
chr6 (59-100)||(4506151-4506192)
chr6 (59-100)||(4585930-4585971)
chr6 (59-100)||(4613515-4613556)
chr6 (59-111)||(845007-845059)
chr6 (59-111)||(870291-870343)
[»] scaffold0184 (1 HSPs)
scaffold0184 (59-175)||(11571-11687)
[»] chr7 (2 HSPs)
chr7 (59-105)||(41511444-41511490)
chr7 (59-99)||(3086715-3086755)
[»] scaffold0477 (1 HSPs)
scaffold0477 (59-105)||(4483-4529)
[»] chr5 (1 HSPs)
chr5 (59-99)||(20155250-20155290)


Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 1969082 - 1969521
Alignment:
Q  1 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969082 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacc 1969181  T
Q  101 cttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969182 cttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggac 1969281  T
Q  201 tgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969282 tgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaa 1969381  T
Q  301 taacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969382 taacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttg 1969481  T
Q  401 gtgtaggaaaacttaaaaatccttagtgtgttagtttctg 440  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1969482 gtgtaggaaaacttaaaaatccttagtgtgttagtttctg 1969521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 2007939 - 2007519
Alignment:
Q  1 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||    
T  2007939 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcagttggtgggttcttgacgcattgtggctggaattcaacc 2007840  T
Q  101 cttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggac 200  Q
    |||||||||||| |||| ||||||||  ||||||| |||||| | ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  2007839 cttgagagtgtggtgcacggtgtgccgttaatcacgtggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggac 2007740  T
Q  201 tgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaa 300  Q
    ||||| |||| ||||||||||| ||||| |||||||| | |||||||| |||||||||||||  ||||||||||||||| || |||||||| || |||||    
T  2007739 tgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgctaaggtgatcaagtatctcatggaaggagacgagggtgagaaattacgcaa 2007640  T
Q  301 taacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttg 400  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2007639 taacatgaaggaattaaaagaagctgcttcaaatgcagtcaaagaagatggttcttctacaaaaactatttctcaaatagcacttaagtggagaaatttg 2007540  T
Q  401 gtgtaggaaaacttaaaaatc 421  Q
    |||||| ||||||||||||||    
T  2007539 gtgtagaaaaacttaaaaatc 2007519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 2004559 - 2004141
Alignment:
Q  1 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||    
T  2004559 ggagaaaggttttgtcattacatcatgggtgccgcagattcaaatcctaagtcacaactcagtcggcgggttcttgactcattgtggctggaattcaacc 2004460  T
Q  101 cttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggac 200  Q
    || ||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||     
T  2004459 ctagagagtgtggtgcatggtgtgccactaataacatggcctctatttgctgagcagaaaatgaatgcggttttgttgagtgaaggactaaaagtgggat 2004360  T
Q  201 tgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaa 300  Q
    ||||| |||| ||||||||||| ||||| |||||||| | |||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||||    
T  2004359 tgagggcaagtgttaatgaaaatggcatagtggaaagggtagaggttgctaaggtgatcaagtgtctcatggaaggggaagaaggtgagaaattgcgcaa 2004260  T
Q  301 taacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttg 400  Q
    |||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||     
T  2004259 taacatgaaggaattaaaagaatctgcttcgaatgctgtcaaagaagatggttcttctacaaacactatttctcaattagcactcaagtggagaaattta 2004160  T
Q  401 gtgtaggaaaacttaaaaa 419  Q
    |||||||||||| ||||||    
T  2004159 gtgtaggaaaacctaaaaa 2004141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 1965140 - 1965552
Alignment:
Q  1 ggagaaaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||| ||||| |  |||||||| || ||||||| ||| ||||| ||||| ||||||    
T  1965140 ggagaaaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcaattggagggttcttgagtcactgtggttggaactcaacc 1965239  T
Q  101 cttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggac 200  Q
    ||||| |||||| ||||||| ||||||||||||||||||||| |||||||||| |||  ||||||||| |||||| ||| ||  ||||| ||||||||||    
T  1965240 cttgaaagtgtggtgcatggagtgccactaatcacatggcctatgtttgctgaacagggaatgaatgcagttttggtgactgggggccttaaagtgggac 1965339  T
Q  201 tgaggccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaa 300  Q
    |||| ||||||||||| |||||||| ||||| ||||| |  ||||||| ||||||||||||| |||||||||||||||||||  ||||||| |||| |||    
T  1965340 tgagaccaagagttaacgaaaacggtattgtcgaaagggtggaggttgctaaggtgatcaagtgtctcatggaaggagaagagtgtgagaaattgcacaa 1965439  T
Q  301 taacatgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttg 400  Q
    ||| |||||||| ||||||| || |||||| |||||| ||||||||||||| ||||||||||| ||||| |||||| || ||||||||||||||||||||    
T  1965440 taatatgaaggagttaaaaggagttgcttccaatgcactcaaagaagatggatcttctacaaagactatatctcaattaacactcaagtggagaaatttg 1965539  T
Q  401 gtgtaggaaaact 413  Q
    ||| |||||||||    
T  1965540 gtgcaggaaaact 1965552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 2011549 - 2011143
Alignment:
Q  6 aaggttttgttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttga 105  Q
    |||||||||| |||||||||||||| || |||||||||||||| ||||| |  ||| |||| || ||||||| ||| ||||| ||||  ||||| |||||    
T  2011549 aaggttttgtcattacatcatgggcacctcagattcaaatccttagtcatagttcagttggcgggttcttgagtcactgtggttggagctcaacacttga 2011450  T
Q  106 gagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgagg 205  Q
     |||||| | ||||| ||||||||||||||||||||| |||||||||| |||  ||||||||| |||||| ||| ||| ||||| |||||||||||||||    
T  2011449 aagtgtggttcatggggtgccactaatcacatggcctatgtttgctgaacagggaatgaatgcagttttggtgactgagggccttaaagtgggactgagg 2011350  T
Q  206 ccaagagttaatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataaca 305  Q
    ||||||||||| ||||| || ||||| ||||| |  ||||||| |||||||||||||||||||||||||||||||||  ||||||| |||| |||||| |    
T  2011349 ccaagagttaacgaaaatggtattgtcgaaagggtggaggttgctaaggtgatcaagcgtctcatggaaggagaagagtgtgagaaattgcacaataata 2011250  T
Q  306 tgaaggaattaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgta 405  Q
    |||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||| |    
T  2011249 tgaaggaattaaaagaagttgcttctaatgcactcaaagaagatggatcttctacaaagactatttctcaattaacactcaagtggagaaatttggtgca 2011150  T
Q  406 ggaaaac 412  Q
    | |||||    
T  2011149 gaaaaac 2011143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 2436895 - 2437287
Alignment:
Q  14 gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt 113  Q
    |||||| |||||||||| || ||| |||||||||| |||||||  ||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||     
T  2436895 gttattccatcatgggcaccacaggttcaaatccttagtcacagatcagttggtggtttcttgagtcactgtggctggaattcaacccttgagagtgtgg 2436994  T
Q  114 tgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 213  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||| || |||| | |||||| ||||||| || ||||||||||||||||||||||||||    
T  2436995 tgcatggtgtgccactaatcacatggcctctttttgccgagcagagaacgaattcggttttgttgagtgagggactaaaagtgggactgaggccaagagt 2437094  T
Q  214 taatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaa 313  Q
    | ||||||| |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||      ||||   | | ||| ||||| |||    
T  2437095 tcatgaaaatggcattgtggaaagggtagaggttgctaaggtgatcaagtgtctcatggaaggagaagaa---ctaaagt---ggagtaatatgaaagaa 2437188  T
Q  314 ttaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaac 412  Q
     |||||||||||||||| |||||| ||||||||||||||||||| ||||| |||||||||||| || |||||||||||||||  |||||| ||||||||    
T  2437189 ctaaaagaagctgcttctaatgcactcaaagaagatggttcttcgacaaagactatttctcaattaacactcaagtggagaagcttggtgcaggaaaac 2437287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 21 - 393
Target Start/End: Original strand, 1963490 - 1963862
Alignment:
Q  21 catcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatgg 120  Q
    |||||||||| || |||||||||||||| |||||||  || |||||||| || ||| |||||||||| |||||||||||||||||||||||| || ||||    
T  1963490 catcatgggcaccacagattcaaatccttagtcacagttccattggtgggtttttgtctcattgtggttggaattcaacccttgagagtgtggtgtatgg 1963589  T
Q  121 tgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagttaatgaa 220  Q
    ||||||||||||||| |||||| ||| ||||||||||| ||  ||||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||     
T  1963590 tgtgccactaatcacttggcctctgtatgctgagcagagaacaaatgcagttttgctctgtgaaggcctaaaagtgggactgaggccaagagttaacgag 1963689  T
Q  221 aacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaattaaaag 320  Q
    || |||||||||||||| | |||  ||| | || |||||||| ||||||||||||| |||||||||| |||  |||| ||||| ||||||||||| ||||    
T  1963690 aatggcattgtggaaagggtagaaattgctgagttgatcaagtgtctcatggaaggggaagaaggtgggaaactgcgtaataatatgaaggaatttaaag 1963789  T
Q  321 aagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggag 393  Q
    ||||||||   | || |   ||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||    
T  1963790 aagctgctagtagtgtacataaagaagatggttctactacaaagactctttctcaattagcactcaagtggag 1963862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 2018329 - 2017931
Alignment:
Q  14 gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt 113  Q
    |||||| |||||||||| || ||||||||||||||  ||||||  ||| ||||||| ||||||||||| ||||| ||||||||||| |||||||||||||    
T  2018329 gttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaacgcttgagagtgtgt 2018230  T
Q  114 tgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 213  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||| | |    
T  2018229 tgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaat 2018130  T
Q  214 taatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaa 313  Q
    |||| | || |||||||||||||  | | |  |||   || | |||||| ||||||||||||| |||||||||| |||  ||||||| || |||||||||    
T  2018129 taatcagaatggcattgtggaaaaggtacaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaa 2018030  T
Q  314 ttaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaac 412  Q
    ||||||||| |||||   | ||||   ||||| ||||| |||| |||||| ||  |||||||| ||||||||||||||||||||||||| ||| |||||    
T  2018029 ttaaaagaatctgctaatagtgcacataaagatgatggatcttttacaaagacactttctcaattagcactcaagtggagaaatttggtatagaaaaac 2017931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 2014946 - 2014632
Alignment:
Q  14 gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt 113  Q
    |||||| |||||||||| || ||||||||||||||  ||||||  ||| ||||||| ||||||||||| ||||| ||||||||||  |||||||||||||    
T  2014946 gttattccatcatgggcaccacagattcaaatccttcgtcacagttcagttggtgggttcttgactcactgtggttggaattcaatgcttgagagtgtgt 2014847  T
Q  114 tgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 213  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| || |||||| |||||| |||||||||| |||||||||||||||||||||| | |    
T  2014846 tgcatggtgtgccactaatcacatggcctctatttgctgagcagagaacgaatgcggttttgttgagtgaaggactaaaagtgggactgaggccaaaaat 2014747  T
Q  214 taatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaa 313  Q
    |||| | || |||||||||||||  | | |  |||   || | |||||| ||||||||||||| |||||||||| |||  ||||||| || |||||||||    
T  2014746 taatcagaatggcattgtggaaaaggtacaaattgcagagttaatcaagtgtctcatggaaggggaagaaggtgggaaactgcgcaaaaatatgaaggaa 2014647  T
Q  314 ttaaaagaagctgct 328  Q
    ||||||||| |||||    
T  2014646 ttaaaagaatctgct 2014632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 3770260 - 3770193
Alignment:
Q  42 aaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt 109  Q
    |||||||||||||||| ||||  |||||||| || || |||||||| ||||||||||| |||||||||    
T  3770260 aaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcaacacttgagagt 3770193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 10201937 - 10201811
Alignment:
Q  58 ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcag 157  Q
    ||||||||| || ||  ||| ||||||||| ||||||||||| |||||||||||| || ||||||||||  | ||  |||||||  | | |||||||||     
T  10201937 ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaa 10201838  T
Q  158 aaaatgaatgccgttttgctgagtgaa 184  Q
    || |||||||| |||||  ||||||||    
T  10201837 aagatgaatgctgttttattgagtgaa 10201811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 184
Target Start/End: Complemental strand, 10209010 - 10208884
Alignment:
Q  58 ctcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcag 157  Q
    ||||||||| || ||  ||| ||||||||| ||||||||||| |||||||||||| || ||||||||||  | ||  |||||||  | | |||||||||     
T  10209010 ctcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggccactctatgctgagcaa 10208911  T
Q  158 aaaatgaatgccgttttgctgagtgaa 184  Q
    || |||||||| |||||  ||||||||    
T  10208910 aagatgaatgctgttttattgagtgaa 10208884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 3707935 - 3708002
Alignment:
Q  42 aaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagt 109  Q
    |||||||||||||||| ||||  |||||||| || || |||||||| |||||||| || |||||||||    
T  3707935 aaatcctaagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgagagt 3708002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 33005188 - 33005106
Alignment:
Q  26 tgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagag 108  Q
    ||||| || |||| |||||||||||| ||||  |||| ||||||||| || || |||||||| ||||||||||| || |||||    
T  33005188 tgggcaccacagactcaaatcctaagccacacttcaactggtggatttttaacacattgtggttggaattcaacactcgagag 33005106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 23269096 - 23269133
Alignment:
Q  326 gcttcaaatgcaatcaaagaagatggttcttctacaaa 363  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  23269096 gcttctaatgcactcaaagaagatggttcttctacaaa 23269133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 5902659 - 5903058
Alignment:
Q  14 gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt 113  Q
    |||||| |||||||||| || |||||| |||  || |||||||  ||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||     
T  5902659 gttattccatcatgggcacctcagattgaaacacttagtcacagatcagttggtggattcttgagtcactgtggctggaattcaatccttgagagtgtga 5902758  T
Q  114 tgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 213  Q
    |||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||| |||||||||| ||||| |||||||||||||||||||| ||    
T  5902759 tgcatggtgtgccactaatcacatggcctttgtttggtgagcaaagaatgaatgcagttgtgctgagtgagggccttaaagtgggactgaggccaagggt 5902858  T
Q  214 taatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaa 313  Q
    |||||| || |||||||| ||||| || ||  ||  |||  |||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||    
T  5902859 taatgataatggcattgttgaaagggaggaaatttctaaattgatcaagggtctcatggaaggagaagaatgtgagaatttgcgcaataatatgaaggaa 5902958  T
Q  314 ttaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaact 413  Q
    |||||||||||| || | |||||  |||||||||| || ||||||| ||| || ||||||||| |||||||||||||||||||||||||| | |||||||    
T  5902959 ttaaaagaagcttctactaatgcgctcaaagaagacgggtcttctagaaagaccatttctcaattagcactcaagtggagaaatttggtgcatgaaaact 5903058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 5906143 - 5906542
Alignment:
Q  14 gttattacatcatgggcgccgcagattcaaatcctaagtcacaactcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgt 113  Q
    |||||| |||||||||| || |||||| ||||||| |||||||  ||| ||||||||||||||| ||||||||| |||| ||||| ||||||||| | |     
T  5906143 gttattccatcatgggcacctcagattgaaatccttagtcacatatcagttggtggattcttgagtcattgtggttggagttcaatccttgagagcgcga 5906242  T
Q  114 tgcatggtgtgccactaatcacatggcctttgtttgctgagcagaaaatgaatgccgttttgctgagtgaaggcctaaaagtgggactgaggccaagagt 213  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  || |||||||||| |||||||| |||||| |||||||||||||    
T  5906243 tgcatggtgtgccactaatcacatggcctctgtttgctgagcagagaatgaatgcatttgtgctgagtgagggcctaaaggtgggagtgaggccaagagt 5906342  T
Q  214 taatgaaaacggcattgtggaaagagaagaggttgttaaggtgatcaagcgtctcatggaaggagaagaaggtgagaagttgcgcaataacatgaaggaa 313  Q
    ||||||||| ||||||||||||||   |||||||  ||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||| |||||||||    
T  5906343 taatgaaaatggcattgtggaaaggatagaggtttctaaggtgatcaagtgtctcatggaaggggaagaatgtgagaaattgcgcaataatatgaaggaa 5906442  T
Q  314 ttaaaagaagctgcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaatttggtgtaggaaaact 413  Q
    || |||||||| ||| | |||||| |  |||||||||| ||||||| ||| ||| |||||||| |||||| |||||||| |||||||||| | |||||||    
T  5906443 ttgaaagaagcagctactaatgcacttcaagaagatgggtcttctagaaagactgtttctcaattagcacacaagtggaaaaatttggtgcatgaaaact 5906542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 5890674 - 5890603
Alignment:
Q  326 gcttcaaatgcaatcaaagaagatggttcttctacaaaaactatttctcaaatagcactcaagtggagaaat 397  Q
    ||||| |||||| ||||||||||||||||||||||||| | | |||||||| ||||||||||||||||||||    
T  5890674 gcttctaatgcactcaaagaagatggttcttctacaaacattttttctcaattagcactcaagtggagaaat 5890603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 3516 - 3557
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  3516 tcaattggtggattcttgactcattgtggatggaattcaacc 3557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4461458 - 4461417
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  4461458 tcaattggtggattcttgactcattgtggatggaattcaacc 4461417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 4622476 - 4622436
Alignment:
Q  60 caattggtggattcttgactcattgtggctggaattcaacc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  4622476 caattggtggattcttgactcattgtggatggaattcaacc 4622436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4557460 - 4557419
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  4557460 tcaattggtggattcttgactcattgtggatggaactcaacc 4557419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4592566 - 4592525
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  4592566 tcaattggtggattcttgactcattgtggatggaactcaacc 4592525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 4490152 - 4490191
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaa 98  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  4490152 tcaattggtggattcttgactcattgtggatggaactcaa 4490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 4266966 - 4267004
Alignment:
Q  62 attggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  4266966 attggtggattcttgactcattgcggatggaattcaacc 4267004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 4299618 - 4299664
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttga 105  Q
    ||||||||||||||||||||||| ||||| ||||| |||||| ||||    
T  4299618 tcaattggtggattcttgactcactgtggatggaactcaaccattga 4299664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 4626286 - 4626240
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttga 105  Q
    ||||||||||||||||| ||||||||||| ||||| |||||| ||||    
T  4626286 tcaattggtggattcttaactcattgtggatggaactcaaccattga 4626240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 4493287 - 4493250
Alignment:
Q  62 attggtggattcttgactcattgtggctggaattcaac 99  Q
    |||||||||||||||||||||||||| ||||| |||||    
T  4493287 attggtggattcttgactcattgtggatggaactcaac 4493250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4506192 - 4506151
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    |||||||||||||||||||||||||| || ||||| ||||||    
T  4506192 tcaattggtggattcttgactcattgcggatggaactcaacc 4506151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 4585971 - 4585930
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||    
T  4585971 tcaattggtggattcttgactcactgtggatggaactcaacc 4585930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 4613515 - 4613556
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacc 100  Q
    |||||||| |||||||||||||||||||| ||||| ||||||    
T  4613515 tcaattggcggattcttgactcattgtggatggaactcaacc 4613556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 845059 - 845007
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgt 111  Q
    ||||||||||| || || ||||||||||| ||||||||||| ||||| |||||    
T  845059 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 845007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 870343 - 870291
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgt 111  Q
    ||||||||||| || || ||||||||||| ||||||||||| ||||| |||||    
T  870343 tcaattggtgggtttttaactcattgtggttggaattcaacacttgaaagtgt 870291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 11687 - 11571
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttgagagtgtgttgcatggtgtgccactaatcacatggcctttgtttgctgagcaga 158  Q
    |||||||||| ||| |||||||||||||| |||||||||   |||||||||||  ||   ||||||||  | ||  | |||||||||||||||||||| |    
T  11687 tcaattggtgcatttttgactcattgtggttggaattcagttcttgagagtgtagtgttgggtgtgcctatgattgcttggcctttgtttgctgagcaaa 11588  T
Q  159 aaatgaatgccgttttg 175  Q
    |||| ||||| ||||||    
T  11587 aaattaatgctgttttg 11571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41511444 - 41511490
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttga 105  Q
    |||||||||||||| |||||||||||||| ||||||||||| |||||    
T  41511444 tcaattggtggatttttgactcattgtggttggaattcaacacttga 41511490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 3086755 - 3086715
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaac 99  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  3086755 tcaattggtggattcttgactcattgtggatggaactcaac 3086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 4483 - 4529
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaacccttga 105  Q
    |||||||||||||||||||||||||| || ||||| |||||| ||||    
T  4483 tcaattggtggattcttgactcattgcggatggaactcaaccattga 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 20155250 - 20155290
Alignment:
Q  59 tcaattggtggattcttgactcattgtggctggaattcaac 99  Q
    |||||||| ||||||||||| |||||||| |||||||||||    
T  20155250 tcaattggaggattcttgacacattgtggatggaattcaac 20155290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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