View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11022_high_22 (Length: 320)
Name: NF11022_high_22
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 302
Target Start/End: Original strand, 14282173 - 14282471
Alignment:
| Q |
4 |
tacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14282173 |
tacagttattgaagcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatc |
14282272 |
T |
|
| Q |
104 |
ttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcatta |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282273 |
ttgttaccgaagtactcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcatta |
14282372 |
T |
|
| Q |
204 |
tctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaacat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14282373 |
tctgaaactgaaaactattactactctttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacgccaacat |
14282471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 14303958 - 14304229
Alignment:
| Q |
31 |
tcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgct |
130 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
14303958 |
tcccatgttcacagcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgttgaatcttgttcccgaagtactcttcccacgct |
14304057 |
T |
|
| Q |
131 |
tgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactct |
230 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || | ||||| |||||||| |||||| |||||||| ||||||||||| ||||||| ||| |
|
|
| T |
14304058 |
tgaaatttaatcacacgcatgttgttaagcaactcattcgttgacttcattctcgaatcgcggctcatcattatccgaaactgaaaaacattactattct |
14304157 |
T |
|
| Q |
231 |
ttgttcgatatagagtaaagaaagagacaatggcaataccaagaattgatgccacgacagacacaccaacat |
302 |
Q |
| |
|
| | ||||||| ||| ||| | ||||||||||| |||||||||||| ||| |||||||| |||||||||| |
|
|
| T |
14304158 |
tcgatcgatatgcagtgaagcagaagacaatggcagtaccaagaattgctgcaacgacagatacaccaacat |
14304229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 14320335 - 14320558
Alignment:
| Q |
17 |
gcagtacccagaattcccatgttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagt |
116 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||| |||| |||||||| |||| |
|
|
| T |
14320335 |
gcagtacccaaaactcctatgttaactgcaaaatagtacaagaatttcgcaatccatccatgctcagcttcgcgaaactgttgaattttgttaccaaagt |
14320434 |
T |
|
| Q |
117 |
actcttcccacgcttgaaacttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||| ||||||||| |||||| || |
|
|
| T |
14320435 |
actcttcccacgcttgaaacttaatcacacgcatgttgttaagtaactcgtttgtcgccttcatcctcgaatcgcggctcgtcattatcttaaactggaa |
14320534 |
T |
|
| Q |
217 |
actattactactctttgttcgata |
240 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
14320535 |
actattactactcttcgttcgata |
14320558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 25885037 - 25885243
Alignment:
| Q |
37 |
gttaactgcaaaatagtacaagaatttcccaatccatccatgttcggcttcacgaaactgtcgaatcttgttaccgaagtactcttcccacgcttgaaac |
136 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
25885037 |
gttaacagcaaaatagtacatgaatttcccaatccatccatgctcggattcacgaaactgtttaatcttgttaccgaaatactcttcccaagcttgaaac |
25885136 |
T |
|
| Q |
137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcagcctcgaatcacggctcctcattatctgaaactgaaaactattactactctttgttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || || |||| |||||||||||||| | ||||||||||| |||| |
|
|
| T |
25885137 |
ttaatcacacgcatgttgttaagcaactcatttgtcgccttcatcctcgaatcgcgacttgtcatcatctgaaactgaaagttgttactactcttggttc |
25885236 |
T |
|
| Q |
237 |
gatatag |
243 |
Q |
| |
|
||||||| |
|
|
| T |
25885237 |
gatatag |
25885243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University