View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11022_high_23 (Length: 311)

Name: NF11022_high_23
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11022_high_23
NF11022_high_23
[»] chr6 (13 HSPs)
chr6 (19-299)||(34140675-34140955)
chr6 (19-299)||(34153291-34153571)
chr6 (19-287)||(1254481-1254749)
chr6 (19-287)||(7430247-7430514)
chr6 (19-287)||(8759578-8759845)
chr6 (19-287)||(8767325-8767591)
chr6 (19-287)||(34296327-34296596)
chr6 (19-287)||(1012-1270)
chr6 (127-287)||(14593763-14593922)
chr6 (199-298)||(7680737-7680836)
chr6 (19-100)||(16448211-16448293)
chr6 (19-80)||(7680831-7680892)
chr6 (253-287)||(8195-8229)
[»] chr5 (18 HSPs)
chr5 (19-299)||(21557093-21557372)
chr5 (19-299)||(24830047-24830326)
chr5 (74-299)||(21554448-21554672)
chr5 (19-287)||(36460694-36460962)
chr5 (19-287)||(22757950-22758218)
chr5 (18-287)||(43242642-43242909)
chr5 (20-287)||(21674582-21674847)
chr5 (20-287)||(1856612-1856878)
chr5 (19-119)||(43242885-43242986)
chr5 (19-100)||(18318641-18318722)
chr5 (18-119)||(18318699-18318801)
chr5 (18-119)||(1856934-1857035)
chr5 (19-119)||(20765748-20765849)
chr5 (20-105)||(21674839-21674924)
chr5 (20-119)||(1856856-1856956)
chr5 (19-105)||(21674916-21675002)
chr5 (19-100)||(20765690-20765771)
chr5 (19-55)||(21554671-21554707)
[»] chr7 (16 HSPs)
chr7 (19-296)||(13744828-13745104)
chr7 (19-299)||(36685298-36685577)
chr7 (19-299)||(30820305-30820584)
chr7 (19-287)||(32772052-32772321)
chr7 (19-287)||(38828785-38829052)
chr7 (74-287)||(15214258-15214470)
chr7 (19-287)||(27565563-27565820)
chr7 (20-287)||(19617021-19617287)
chr7 (18-100)||(48274014-48274096)
chr7 (19-118)||(48273781-48273881)
chr7 (18-119)||(19616942-19617043)
chr7 (19-118)||(48273859-48273959)
chr7 (18-119)||(10063440-10063541)
chr7 (19-119)||(48273937-48274038)
chr7 (18-105)||(27565485-27565572)
chr7 (19-97)||(10063319-10063397)
[»] chr3 (32 HSPs)
chr3 (19-299)||(31224002-31224281)
chr3 (19-299)||(13520007-13520286)
chr3 (19-299)||(14479633-14479912)
chr3 (19-287)||(14647164-14647431)
chr3 (19-287)||(11913445-11913713)
chr3 (19-287)||(51602659-51602928)
chr3 (74-296)||(50755454-50755675)
chr3 (25-287)||(19444317-19444578)
chr3 (25-287)||(19450883-19451144)
chr3 (19-287)||(30123510-30123777)
chr3 (20-287)||(14085257-14085523)
chr3 (20-287)||(14090658-14090924)
chr3 (127-287)||(10988943-10989102)
chr3 (19-287)||(12270614-12270879)
chr3 (20-287)||(24122388-24122654)
chr3 (127-287)||(49400364-49400523)
chr3 (20-251)||(8582515-8582745)
chr3 (18-100)||(10550835-10550917)
chr3 (18-119)||(14085178-14085279)
chr3 (18-119)||(14090579-14090680)
chr3 (18-119)||(24122632-24122733)
chr3 (18-105)||(12270870-12270958)
chr3 (19-119)||(19444234-19444334)
chr3 (24-119)||(19450805-19450900)
chr3 (20-118)||(21618837-21618936)
chr3 (20-118)||(36166986-36167085)
chr3 (18-105)||(49400120-49400207)
chr3 (19-119)||(8582723-8582823)
chr3 (19-100)||(21618914-21618995)
chr3 (19-100)||(36167063-36167144)
chr3 (20-119)||(49400199-49400299)
chr3 (246-287)||(8579375-8579416)
[»] scaffold0379 (1 HSPs)
scaffold0379 (19-299)||(10424-10704)
[»] scaffold0635 (1 HSPs)
scaffold0635 (18-287)||(7607-7875)
[»] chr2 (11 HSPs)
chr2 (18-287)||(10039195-10039463)
chr2 (19-287)||(21132714-21132981)
chr2 (20-287)||(6743431-6743697)
chr2 (20-287)||(201347-201613)
chr2 (20-287)||(43694127-43694393)
chr2 (20-267)||(26861392-26861637)
chr2 (137-301)||(13361775-13361938)
chr2 (18-119)||(6743753-6743854)
chr2 (19-119)||(43694049-43694149)
chr2 (19-119)||(6743675-6743776)
chr2 (18-63)||(201288-201333)
[»] scaffold0059 (1 HSPs)
scaffold0059 (19-299)||(49350-49629)
[»] scaffold0104 (6 HSPs)
scaffold0104 (19-299)||(14574-14854)
scaffold0104 (19-287)||(26650-26918)
scaffold0104 (19-287)||(28032-28300)
scaffold0104 (57-299)||(16632-16874)
scaffold0104 (19-265)||(7943-8189)
scaffold0104 (57-265)||(18652-18860)
[»] scaffold0546 (1 HSPs)
scaffold0546 (19-284)||(9980-10245)
[»] scaffold0109 (1 HSPs)
scaffold0109 (19-284)||(3062-3327)
[»] chr4 (13 HSPs)
chr4 (19-287)||(56114896-56115164)
chr4 (74-287)||(24046614-24046826)
chr4 (19-287)||(11201538-11201804)
chr4 (19-287)||(11208269-11208535)
chr4 (19-105)||(11201795-11201881)
chr4 (19-105)||(11208526-11208612)
chr4 (19-119)||(8574496-8574597)
chr4 (19-100)||(8574372-8574453)
chr4 (19-119)||(54798381-54798482)
chr4 (18-83)||(14280703-14280769)
chr4 (18-105)||(11208603-11208690)
chr4 (19-63)||(14280802-14280846)
chr4 (19-63)||(54798360-54798404)
[»] scaffold0077 (4 HSPs)
scaffold0077 (19-287)||(22239-22507)
scaffold0077 (74-287)||(17338-17550)
scaffold0077 (19-105)||(23292-23378)
scaffold0077 (19-55)||(17549-17585)
[»] chr8 (12 HSPs)
chr8 (19-287)||(42559589-42559856)
chr8 (19-287)||(44432586-44432853)
chr8 (19-287)||(364512-364781)
chr8 (20-287)||(23825866-23826132)
chr8 (20-287)||(3698328-3698594)
chr8 (137-298)||(26859353-26859513)
chr8 (206-287)||(21321302-21321383)
chr8 (213-283)||(20494488-20494558)
chr8 (213-287)||(21325900-21325974)
chr8 (18-105)||(3698249-3698336)
chr8 (19-119)||(23825788-23825888)
chr8 (19-63)||(26220104-26220148)
[»] scaffold0599 (1 HSPs)
scaffold0599 (19-287)||(721-989)
[»] scaffold0577 (3 HSPs)
scaffold0577 (74-299)||(8735-8959)
scaffold0577 (19-113)||(6171-6265)
scaffold0577 (23-67)||(8704-8748)
[»] scaffold0026 (1 HSPs)
scaffold0026 (19-266)||(123643-123888)
[»] chr1 (8 HSPs)
chr1 (19-287)||(2332193-2332460)
chr1 (20-287)||(21542782-21543048)
chr1 (20-287)||(42095075-42095341)
chr1 (19-215)||(45496670-45496855)
chr1 (215-299)||(45499214-45499298)
chr1 (19-113)||(2332443-2332538)
chr1 (18-119)||(21542703-21542804)
chr1 (19-119)||(42095319-42095420)
[»] scaffold0106 (2 HSPs)
scaffold0106 (20-287)||(39127-39393)
scaffold0106 (18-119)||(39048-39149)
[»] scaffold0076 (4 HSPs)
scaffold0076 (20-287)||(29330-29596)
scaffold0076 (20-287)||(34731-34997)
scaffold0076 (18-119)||(29574-29675)
scaffold0076 (18-119)||(34975-35076)
[»] scaffold0011 (2 HSPs)
scaffold0011 (20-287)||(173746-174012)
scaffold0011 (18-119)||(173990-174091)
[»] scaffold0028 (4 HSPs)
scaffold0028 (23-287)||(46164-46427)
scaffold0028 (20-287)||(51568-51834)
scaffold0028 (18-100)||(51831-51913)
scaffold0028 (18-95)||(46432-46509)
[»] scaffold0601 (1 HSPs)
scaffold0601 (74-306)||(4291-4522)
[»] scaffold0022 (2 HSPs)
scaffold0022 (19-119)||(116817-116918)
scaffold0022 (19-119)||(116895-116995)
[»] scaffold0188 (1 HSPs)
scaffold0188 (18-100)||(38-121)
[»] scaffold0008 (1 HSPs)
scaffold0008 (50-100)||(72221-72271)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 34140955 - 34140675
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  34140955 catcatacatactgaaattacagattttctgtcaaaaccgcctcacgatcactggaatcacctcacaatttcgacagcatcatacatgctgaaatcacat 34140856  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34140855 atttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaatcgtccataattatcaccatatgattacccta 34140756  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34140755 tcattagaacgttaatccctcactaacctacctaattaaccactcatttcaccgttcaattctatggttcactttacccta 34140675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 34153571 - 34153291
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  34153571 catcatacatactgaaattacagattttctgtcaaaaccgcctcacgatcactggaatcacctcacaatttcgacagcatcatacatgctgaaatcacat 34153472  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34153471 atttttttgcgattttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaatcgtccataattatcaccatatgattacccta 34153372  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34153371 tcattagaacgttaatccctcactaacctacctaattaaccactcatttcaccgttcaattctatggttcactttacccta 34153291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 1254481 - 1254749
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||    
T  1254481 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcatacatgctgatattaca 1254580  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  1254581 gatttttctgcgattttctaccatgggagcatccttggctccgttttttga-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 1254679  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  ||| ||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  1254680 atcattgaaacattaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 1254749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 7430247 - 7430514
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||| ||||||  |||    
T  7430247 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcagacatactgaaagtaca 7430346  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  7430347 gattttct-gcgattttctaccatgggagcctccttggctccgtttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 7430444  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| |||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  7430445 atcattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattctatggtt 7430514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 8759845 - 8759578
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| ||||||||||||||  |||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||     
T  8759845 catcagacataatgaaattacagattttctgtcaaaattgcctcacgatcactgggatcgcctcatgatttcgacagcatcagacatgctgaaatcacat 8759746  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||||||||| || | ||||||||||||||||||  |  ||||| ||||||||||||||||||||    
T  8759745 atttttctgcgattttctaccatgggagcctccttggctccgtttgttaa-ccctaaactctccaaaatcattgataatcatcaccatatgattacccta 8759647  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||| ||||| ||||||||||||||||||| ||||||| |||||||    
T  8759646 tcattaaaacgttaacccatcactaacatacctgattaaccactcttttcaccattcaattatatggtt 8759578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 8767591 - 8767325
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| | | ||||| |||||||||||||||| ||||  |||||| ||||    
T  8767591 catcagacataatgaaattacagattttctgtcaaaatcgcctcacgatcactgggaccgcctcatgatttcgacagcatcagacatattgaaattacag 8767492  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||  |||||||| ||||||||||||||||||||    
T  8767491 attttct-gcgattttctaccatgggagcctccttggctccgtttcttaa-ccctaaactctctaaaatcatccataatcatcaccatatgattacccta 8767394  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  8767393 tcattaaaacgttaacccatcactaacatacctgattaaccactcttttcaccattcaattctatggtt 8767325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 34296596 - 34296327
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||    
T  34296596 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactaggatcgcctcacgatttcgacagcatcatacatgctgatattaca 34296497  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||| ||||| ||   || |||| ||||||||||  ||||||||  | ||||||||||||||||    
T  34296496 gatttttctgcgattttctaccatgggagcctccttggctgcgtttttttgaccttaaattctccaaaatcatccataatccttaccatatgattaccct 34296397  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  || |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34296396 atcattgaaatgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 34296327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 1012 - 1270
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||  |||||||||||||| |||||||||||| ||| || |||    
T  1012 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgtctcacgatttcgacggcatcatacatgttgatattaca 1111  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||        |||| |||||||||||||| |||||||||||||||| |||| ||||||||||||||          |||| |||||||||||||||||||    
T  1112 gatttttctacgattttctaccatgggagtctccttggctccgttttttga-ccctaaactctcca----------taatcatcaccatatgattaccct 1200  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| ||||||| |||||  |||||||||||||||||||||||||||||||||||    
T  1201 atcattaaaacgttaatccatcactaagctacccgattaaccactcttttcaccgttcaattctatggtt 1270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 14593922 - 14593763
Alignment:
Q  127 gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattaga 226  Q
    ||||| ||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||||||||| |    
T  14593922 gcgattttctaccatgggaacctccttggctccatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccctatcattaaa 14593824  T
Q  227 acgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| || |||||||||||||| |||||||||||||| |||| ||||||| |||||||    
T  14593823 acgttaacccatcactaacctacctgattaaccactctttacaccattcaattatatggtt 14593763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 298
Target Start/End: Complemental strand, 7680836 - 7680737
Alignment:
Q  199 atcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttaccct 298  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  7680836 atcaccatatgattaccctatcattagaacattaatccctcactaacctacctgattaaccactcttttcactgttcaattctatggttcactttaccct 7680737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 16448293 - 16448211
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  16448293 catcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 16448211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 7680892 - 7680831
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacc 80  Q
    |||||||||||||||||||||| ||||||| || ||| | ||||| ||||||||||||||||    
T  7680892 catcagacatactgaaattacagattttctatccaaatctcctcatgatcactggaatcacc 7680831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 8195 - 8229
Alignment:
Q  253 attaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||||||||||||||||||||||||||||||||    
T  8195 attaaccactcttttcaccgttcaattctatggtt 8229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 21557372 - 21557093
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21557372 catcagacatactgaaattacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgaaatcacag 21557273  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  21557272 atttttctgcgattttctaccatgggagcctccttggctccgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccta 21557174  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||| ||||| ||||| |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  21557173 tcattaaaacgtcaatccatcactaccctacctgattaaacactcttttcaccgttcaattctatggttcactttacccta 21557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 24830326 - 24830047
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||| | |||||||||| ||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||    
T  24830326 catcagacatactgaaattatagattttctgtccaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatgctgaaatcatag 24830227  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       || || |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  24830226 atttttctgcaattttctaccatgggagcctccttggctccgtttcttga-ccctaaaatctccaaaatcgtccataatcatcaccatatgattacccta 24830128  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  24830127 tcattagaacattaatccctcactaacctacctgattaaccactcttttcaacgttcaattatatggttcactttacccta 24830047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 74 - 299
Target Start/End: Complemental strand, 21554672 - 21554448
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| |||||||||||||||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||||||| ||||||||| | ||    
T  21554672 aatcgcctcacgatttcgacagcatcatacatgctgaaatcacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttga-ctct 21554574  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||||||||||||||| |    
T  21554573 aaactctccaaaatcgtccataatcatcaccatatgattaccctatcattaaaacgttaatccatcactaccctacctgattaaccactcttttcacctt 21554474  T
Q  274 tcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||||||||||    
T  21554473 tcaattctatggttcactttacccta 21554448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 36460694 - 36460962
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| || |||    
T  36460694 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgattttgacagcatcatacatgctgatattaca 36460793  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||||||| |||||||| || | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  36460794 gatttttctgcgattttctaccatgggagcctccttgactccgttttttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 36460892  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  ||||||||||| |||||||||||||  ||||||||||||||||||||||| ||| |||||||    
T  36460893 atcattgaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttccattatatggtt 36460962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 22758218 - 22757950
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||||||||||| || |||    
T  22758218 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgactgcatcatacatgctgatattaca 22758119  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||| ||||||||||||| | |||| | |||| |||||||||||||  |||||||| |||||| ||||||||||||    
T  22758118 gatttttctgcgattttctaccatgggaacctccttggctccatctcttaa-ccctcaactctccaaaatcatccataatcatcaccctatgattaccct 22758020  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| |||||||| || |||||||| ||||| ||||||||||||||||||| |||||||||||||||    
T  22758019 atcattaaaacgttaacccatcactaacttacctgattaaccactcttttcaccattcaattctatggtt 22757950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 43242909 - 43242642
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||| ||| ||||| |||||||||||||||| ||||  |||||| |||    
T  43242909 acatcagacatattgaaattacagattttctgtcaaaatcgcatcacgatcactgggatcgcctcatgatttcgacagcatcagacatattgaaattaca 43242810  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||| |||||||||||||||| ||    
T  43242809 gattttct-gcgattttctaccatgggagcctccttggctccgtttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattactct 43242712  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| |||||||| || |||||||||||||| |||||||||||||| |||| ||||||| |||||||    
T  43242711 atcattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattatatggtt 43242642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 21674847 - 21674582
Alignment:
Q  20 atcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacaga 119  Q
    |||||||||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| ||| |    
T  21674847 atcagacatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatcctaaaattacaca 21674748  T
Q  120 nnnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctat 219  Q
           ||||| ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  |||||||||||||||||||||    
T  21674747 ttttct-gcgattttctaccatgggaacctccttggctccatctcttta-ccctaaactctccaaaatcatccataaacatcaccatatgattaccctat 21674650  T
Q  220 cattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||| |||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  21674649 cattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattctatggtt 21674582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 1856878 - 1856612
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| ||||||||||| ||||||||| || |||| |||     
T  1856878 atcagacatgctgaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagtatcatacatcctaaaattacac 1856779  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| ||||||||||||| | |||  | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  1856778 attttct-gcgattttctaccatgggaacctccttggctccatctctcaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 1856681  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  1856680 tcattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattctatggtt 1856612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 43242986 - 43242885
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||| ||||| ||||  |||||| |||    
T  43242986 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacaacatcagacatattgaaattaca 43242887  T
Q  118 ga 119  Q
    ||    
T  43242886 ga 43242885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 18318722 - 18318641
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||||||||||| |||||||| |||||||||| ||| ||||||| ||||||| ||||||||||| ||||||||||||||||    
T  18318722 catcagacatactaaaattacagattttctgtcgaaatcgcctcatgatcactagaatcacctcatgatttcgacagcatca 18318641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 18318801 - 18318699
Alignment:
Q  18 acatcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcac 116  Q
    |||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| ||    
T  18318801 acatcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattac 18318702  T
Q  117 aga 119  Q
    |||    
T  18318701 aga 18318699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 1857035 - 1856934
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  1857035 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 1856936  T
Q  118 ga 119  Q
    ||    
T  1856935 ga 1856934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 20765849 - 20765748
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||| ||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  20765849 catcagacatactaaaattacagatttttctgtcaaaatcgcatcatgatcactagaatcgcctcatgatttcgacagcatcaaacatactaaaattaca 20765750  T
Q  118 ga 119  Q
    ||    
T  20765749 ga 20765748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 21674924 - 21674839
Alignment:
Q  20 atcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    |||||||||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| ||||    
T  21674924 atcagacatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacat 21674839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 1856956 - 1856856
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||| ||||    
T  1856956 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaattacag 1856857  T
Q  119 a 119  Q
    |    
T  1856856 a 1856856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 21675002 - 21674916
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    |||||| |||||| |||||||| |||||||||||||| ||||||| ||||||| ||||| ||||| ||| ||||||| |||| ||||    
T  21675002 catcagtcatactaaaattacagattttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatctcgacagtatcagacat 21674916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 20765771 - 20765690
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||| ||||||| |||||||| |||||||||| ||| ||||||| ||||||| ||||| |||||  |||||||||||||||    
T  20765771 catcaaacatactaaaattacagattttctgtcgaaatcgcctcatgatcactagaatcgcctcataatttcgacagcatca 20765690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 21554707 - 21554671
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaa 55  Q
    |||||||||||||||||||||| ||||||||||||||    
T  21554707 catcagacatactgaaattacagattttctgtcaaaa 21554671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 13745104 - 13744828
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||      
T  13745104 catcagacatactaaaattacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacatcatcatacatgctgaaatcactt 13745005  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||    
T  13745004 atttttctgcgattttctaccatgggagcctccttggctccgtttcttga-ccctaaactctccaaaatcgtccataattataaccatatgattacccta 13744906  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacc 296  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13744905 tcattagaacgttaatccatcactaacctacctgattaaccactcttttcaccgttcaattctatggttcactttacc 13744828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 36685577 - 36685298
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||     
T  36685577 catcagacatactgaaattacaaattttctgtcaatatcgcctcacgatcaatggaatcgcctcacgatttcgacagcatcatacatgctgaaatcacat 36685478  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |        |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||| |    
T  36685477 atttttctacgattttctaccataggagcctccttggctccgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccca 36685379  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||| ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  36685378 tcattaaaacgttaatccatcactaccctacctgattaaccactcttttcactgttcaattctatggttcactttacccta 36685298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 30820584 - 30820305
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| |||||||||||||||| |||||||||||||| || |||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||    
T  30820584 catcaaacatactgaaattacagattttctgtcaaaatcgtctcacgatcactgggatcgcgtcacgatttcgacaacatcatacatgctgaaatcacag 30820485  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||| |||||| |||||||||||||    
T  30820484 atttttctgcgattttctaccatgggagccttcttggctccgtttcttga-ccttaaactctccaaaatcgtccataatcatcaccgtatgattacccta 30820386  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||| ||||||||||| |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30820385 tcattaaaacgttaatccatcactaccctacctggttaaccactcttttcaccgttcaattctatggttcactttacccta 30820305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 32772052 - 32772321
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||    
T  32772052 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattaca 32772151  T
Q  118 gannnnnnn-gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccc 216  Q
    ||        ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  | |||||| |||| ||| |||||||||    
T  32772152 gattttttttgcgattttctaccatgggagcctccttggctccgttttttga-ccctaaactctccaaaatcattcataatcatcatcatctgattaccc 32772250  T
Q  217 tatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||||| ||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||||    
T  32772251 tatcattaaaacgttaatccatcactaacctatccgattaaccactcttttcaccgttcaattctatggtt 32772321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 38828785 - 38829052
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||  ||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||  || ||| |||    
T  38828785 catcagacatgttgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcagacatattggaattaca 38828884  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  38828885 gattttct-gcgattttctaccatgggagcctccttggctccatctcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 38828982  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  38828983 atcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 38829052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 74 - 287
Target Start/End: Original strand, 15214258 - 15214470
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| ||||||||||||||| |||||||||||||||| || |||||       ||||| ||||||||||||||||||||||||||||||| |||| ||||    
T  15214258 aatcgcctcacgatttcgaccgcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctccgttttttga-ccct 15214356  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    ||||||||||||||  ||||||||  ||||||||||||||||||||||||  ||||||||||| |||||||||||||  |||||||||||||||||||||    
T  15214357 aaactctccaaaatcatccataatcgtcaccatatgattaccctatcattgaaacgttaatccatcactaacctacccgattaaccactcttttcaccgt 15214456  T
Q  274 tcaattctatggtt 287  Q
    |||||| |||||||    
T  15214457 tcaattatatggtt 15214470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 27565563 - 27565820
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| ||||||||||||||||    
T  27565563 catcagacatactaaaattacacatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcaca 27565662  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||           | ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  |||||||||||||||||||    
T  27565663 ga-----------ttttctaccatgggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattaccct 27565750  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  27565751 atcattaaaacgttaaaccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 27565820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 19617021 - 19617287
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  19617021 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 19617120  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  19617121 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 19617218  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  19617219 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 19617287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 48274014 - 48274096
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    |||||||||||||| |||||||| |||||||||| ||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  48274014 acatcagacatactaaaattacagattttctgtcgaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 48274096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 48273781 - 48273881
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  48273781 catcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcaaacatactaaaattaca 48273880  T
Q  118 g 118  Q
    |    
T  48273881 g 48273881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 19616942 - 19617043
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  19616942 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 19617041  T
Q  118 ga 119  Q
    ||    
T  19617042 ga 19617043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 48273859 - 48273959
Alignment:
Q  19 catcagacatactgaaattaca-tattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||| ||||||| |||||||| | ||||||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  48273859 catcaaacatactaaaattacagttttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcaaacatactaaaattaca 48273958  T
Q  118 g 118  Q
    |    
T  48273959 g 48273959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 10063541 - 10063440
Alignment:
Q  18 acatcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcac 116  Q
    |||||||||||||| |||| ||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| ||    
T  10063541 acatcagacatactaaaat-acagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattac 10063443  T
Q  117 aga 119  Q
    |||    
T  10063442 aga 10063440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 48273937 - 48274038
Alignment:
Q  19 catcagacatactgaaattaca-tattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||| ||||||| |||||||| | ||||||||||||| ||||||| ||||||| ||||| ||||| |||||||||| ||||| |||| || |||| |||    
T  48273937 catcaaacatactaaaattacagttttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacaacatcagacatactaaaattaca 48274036  T
Q  118 ga 119  Q
    ||    
T  48274037 ga 48274038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 27565485 - 27565572
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||| || || ||||| | || ||||||||||| ||||    
T  27565485 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcactagagtcgcctcatgtttccgacagcatcagacat 27565572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 10063397 - 10063319
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagca 97  Q
    ||||||||||||| |||||||| ||||| |||| ||| ||||||| ||||||| ||||| ||||| || ||||||||||    
T  10063397 catcagacatactaaaattacagattttttgtcgaaatcgcctcatgatcactagaatcgcctcatgaattcgacagca 10063319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 31224281 - 31224002
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||     
T  31224281 catcagacatactgaaattacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctaaaatcacat 31224182  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  31224181 atttttctgcgattttctaccatgggagcctcattggctccgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccta 31224083  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31224082 tcattaaaacgttaatccatcactaccctacctgattaaccactcttttcaccgttcaattctatggttcactttacccta 31224002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 13520007 - 13520286
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| ||||| |||||||||| |||||||||| |||  |||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||    
T  13520007 catcaaacatattgaaattacagattttctgtccaaattgcctcacgatcactgggatcgcctcatgatttcgacatcatcatacatgctgaaatcacag 13520106  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  13520107 atttttctgcgattttctaccatgggagcctccttggctctgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccta 13520205  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13520206 tcattagaacgttaatccatcactaacctacctaattaaccactcttttcaccgttcaattctttggttcactttacccta 13520286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 14479912 - 14479633
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||  ||||| |||||||||||||||| |||| ||||| ||||||    
T  14479912 catcagacatactgaaattacagattttctgtcaaaatcgcctcatgatcactggaattgcctcatgatttcgacagcatcagacattctgaagtcacag 14479813  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14479812 atttttctgcgattttctaccatgggagcctccttggctccgtttcttaa-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccta 14479714  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||| ||| |||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  14479713 tcattaaaacattaatccctcactaacctacctgattaacgacacttttcaccgttcaattctatggttcactttacccta 14479633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 14647431 - 14647164
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||  |||||| |||    
T  14647431 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcagacatattgaaattaca 14647332  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  14647331 gattttct-gcgattttctaccatgggagcctccttggctccatctcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 14647234  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14647233 atcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 14647164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 11913445 - 11913713
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||| ||  ||    
T  11913445 catcagacatactgaaatttacagattttctgtcaaaatcgcctcatgatcattgggatcgcctcacgatttcgacagcatcatatatgctgatattgca 11913544  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||  |||||||| |||||||||||||||||||    
T  11913545 gatttttctgcgattttctaccatgggagcctccttggctccgttttttga-ccctaaactctctaaaatcatccataatcatcaccatatgattaccct 11913643  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  11913644 atcattgaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 11913713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 51602928 - 51602659
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||| || |||    
T  51602928 catcagacatattgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcatgatttcgacagcatcatacatgctgatattaca 51602829  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||        |||| ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||  ||||||||  || |||||||||||||||    
T  51602828 gatttttctacgattttctaccatgggagcctccttggctccgttttttgaccctaaaactctccaaaatcatccataatcctcgccatatgattaccct 51602729  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  51602728 atcattgaaacgttaatccctcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 51602659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 74 - 296
Target Start/End: Complemental strand, 50755675 - 50755454
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| ||||| |||||||||||||||||||||||| |||||| |||       ||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  50755675 aatcgcctcatgatttcgacagcatcatacatgctaaaatcatagatttttctgcgattttctaccatgggagcctccttggctccatttcttga-ccct 50755577  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||    
T  50755576 aaactctccaaaatcgtcaataatcatcaccatatgattaccctatcattagaacattaatccatcactaacctacctgattaaccactcttttcaccgt 50755477  T
Q  274 tcaattctatggttcactttacc 296  Q
    |||||||||||||||||||||||    
T  50755476 tcaattctatggttcactttacc 50755454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 19444317 - 19444578
Alignment:
Q  25 acatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnn 124  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||   ||| ||||| |||||||||||| || |||||  |||||| |||||         
T  19444317 acatattgaaattacagattttctgtcaaaatcgcctcacgatcactatcatcgcctcatgatttcgacagcttcctacatattgaaattacagattttt 19444416  T
Q  125 nngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcatta 224  Q
       |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||    
T  19444417 ctacgattttctaccatgggagcctccttggctccatttcttga-ccctaaactctccaaaatcatccataatcatcaccataggattaccctatcatta 19444515  T
Q  225 gaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
     |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19444516 aaacgttaacccatcactaacctacctaattaaccactcttttcaccattcaattctatggtt 19444578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 25 - 287
Target Start/End: Original strand, 19450883 - 19451144
Alignment:
Q  25 acatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnn 124  Q
    ||||| |||||||||| |||||||||||||| |||||||||||||||   ||| ||||| |||||||||||| || |||||  |||||| |||||         
T  19450883 acatattgaaattacagattttctgtcaaaatcgcctcacgatcactatcatcgcctcatgatttcgacagcttcctacatattgaaattacagattttt 19450982  T
Q  125 nngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcatta 224  Q
       |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  19450983 ctacgattttctaccatgggagcctccttggctccatttcttga-ccctaaactctccaaaatcatccataatcatcaccatatgattaccctatcatta 19451081  T
Q  225 gaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
     || ||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  19451082 aaatgttaacccatcactaacctaccttattaaccactcttttcaccattcaattctatggtt 19451144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 30123777 - 30123510
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    |||||| |||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||  |||||  |||    
T  30123777 catcaggcatattgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcagacatattgaaaataca 30123678  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||| |||||||| |||||| | ||||||||||||||||||  |||||||| ||||||||||||| || ||    
T  30123677 gattttct-gcgattttctaccatgggagcctcattggctccatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgataacact 30123580  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||  |||| || |||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  30123579 atcattaaaaaattaaaccatcactaacctacctgattaaccactcttttcaccattcaattctacggtt 30123510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 14085257 - 14085523
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  14085257 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 14085356  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  14085357 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 14085454  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  14085455 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 14085523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 14090658 - 14090924
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  14090658 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 14090757  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  14090758 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 14090855  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  14090856 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 14090924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 127 - 287
Target Start/End: Complemental strand, 10989102 - 10988943
Alignment:
Q  127 gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattaga 226  Q
    ||||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||  |||||||| |||||||||||||||||||||||||| |    
T  10989102 gcgattttctaccatgggagcctccttggctccgttacttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccctatcattaaa 10989004  T
Q  227 acgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  10989003 acgttaacccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 10988943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 12270879 - 12270614
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||||| |||||||| | |||||||||||| ||||||| ||||||| ||||  ||||| ||||||||||| |||| ||||  | |||| |||     
T  12270879 catcagacatactaaaattacacaatttctgtcaaaatcgcctcatgatcactagaattgcctcatgatttcgacagtatcagacatattaaaattacac 12270780  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       || || ||||||||||||  ||||||||||||| | |||| | ||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  12270779 attttct-gcaattttctaccatggggacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattacccta 12270682  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||| ||| |||||||||||||||    
T  12270681 tcattaaaacgttaacccatcactaacctacctgattaaccactctttt-accattcaattctatggtt 12270614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 24122654 - 24122388
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || |||||  |||| ||||||||||| |||| |||| || |||| |||     
T  24122654 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgactcatgatttcgacagtatcagacatcctaaaattacac 24122555  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  24122554 attttct-gcgattttctaccatgggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 24122457  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  24122456 tcattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattctatggtt 24122388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 127 - 287
Target Start/End: Original strand, 49400364 - 49400523
Alignment:
Q  127 gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattaga 226  Q
    ||||| ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  |||||||||||||||||||||||||| |    
T  49400364 gcgattttctaccatgggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattaccctatcattaaa 49400462  T
Q  227 acgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  49400463 acgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 49400523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 20 - 251
Target Start/End: Complemental strand, 8582745 - 8582515
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||| || ||||| ||||| ||||||||||  |||| |||| || |||| |||     
T  8582745 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatccctagaatcgcctcatgatttcgacaatatcagacatcctaaaattacac 8582646  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  8582645 attttct-gcgattttctaccatgggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 8582548  T
Q  219 tcattagaacgttaatccctcactaacctacct 251  Q
    |||||| |||||||| |  ||||||||||||||    
T  8582547 tcattaaaacgttaacctatcactaacctacct 8582515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 10550835 - 10550917
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||| |||||||  |||| |||||  |||||||||||||||    
T  10550835 acatcagacatactaaaattacagattttctgtcgaaaccgcctcatgatcactaaaatcgcctcataatttcgacagcatca 10550917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 14085178 - 14085279
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  14085178 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 14085277  T
Q  118 ga 119  Q
    ||    
T  14085278 ga 14085279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 14090579 - 14090680
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  14090579 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 14090678  T
Q  118 ga 119  Q
    ||    
T  14090679 ga 14090680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 24122733 - 24122632
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  24122733 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 24122634  T
Q  118 ga 119  Q
    ||    
T  24122633 ga 24122632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 12270958 - 12270870
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacga-tcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| || ||||| ||||| ||||| |||||||||||||||| ||||    
T  12270958 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgattcactagaatcgcctcatgatttcgacagcatcagacat 12270870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 19444234 - 19444334
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| |||||||||||||| ||| |||||||||||   ||| ||||| |||||||||||| || |||||  |||||| ||||    
T  19444234 catcagacatattgaaattacagattttctgtcaaaatcgcatcacgatcactatcatcgcctcatgatttcgacagcttcctacatattgaaattacag 19444333  T
Q  119 a 119  Q
    |    
T  19444334 a 19444334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 19450805 - 19450900
Alignment:
Q  24 gacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacaga 119  Q
    |||||| |||||||||| |||||||||||||| |||||||||||||||   ||| ||||| |||||||||||| || |||||  |||||| |||||    
T  19450805 gacatattgaaattacagattttctgtcaaaatcgcctcacgatcactatcatcgcctcatgatttcgacagcttcctacatattgaaattacaga 19450900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 21618837 - 21618936
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||| ||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| | ||| ||||||||||||||||||||| || |||| ||||    
T  21618837 atcagacacactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcttcatgatttcgacagcatcatacatactaaaattacag 21618936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 36166986 - 36167085
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||| ||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| | ||| ||||||||||||||||||||| || |||| ||||    
T  36166986 atcagacacactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcttcatgatttcgacagcatcatacatactaaaattacag 36167085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 49400120 - 49400207
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| ||||    
T  49400120 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacat 49400207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 8582823 - 8582723
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||| |||||| |||||||| |||||||||||||| ||| ||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| ||||    
T  8582823 catcagtcatactaaaattacagattttctgtcaaaatcgcatcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattacag 8582724  T
Q  119 a 119  Q
    |    
T  8582723 a 8582723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 21618914 - 21618995
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||| ||||||| ||||||||  ||||||||| ||| ||||||| || |||| ||||| ||||| ||||||||||||||||    
T  21618914 catcatacatactaaaattacaggttttctgtcgaaatcgcctcatgagcactagaatcgcctcatgatttcgacagcatca 21618995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 36167063 - 36167144
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||| ||||||| ||||||||  |||||| || ||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  36167063 catcatacatactaaaattacaggttttctatcgaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 36167144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 49400199 - 49400299
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||| | ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||| || |||| ||||    
T  49400199 atcagacatactaaaattatagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatactaaaattacag 49400298  T
Q  119 a 119  Q
    |    
T  49400299 a 49400299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 8579416 - 8579375
Alignment:
Q  246 ctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||||||||| |||| |||||||||||||||    
T  8579416 ctacctgattaaccactctttccaccattcaattctatggtt 8579375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 10424 - 10704
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||     
T  10424 catcagacatactgaaattacagattttctgtcaaaatcgcctcacgatcacaggaatcgcctcatgattttgacagcatcatacatgttgaaatcacaa 10523  T
Q  119 annnnnnn-gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    |        ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  10524 attttttctgcgattttctaccatgggagtctccttggctccgtttcttga-ccctaaactctccaaaattgtccataatcatcaccatatgattaccct 10622  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  10623 atcattagaacgttaatccatcactaacctacctgattaaccactcttttcaccgttaaattctatggttcactttacccta 10704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 7607 - 7875
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || ||| || |||    
T  7607 acatcagacatactgaaattacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacgtgttgatattaca 7706  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  7707 gatttttctgcgattttctaccatgggagcctccttggctccgtttcttga-ccctaaactctccaaaataatccataatcatcaccatatgattaccct 7805  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  7806 atcattaaaacgttaatccatcactaacctacctgattaaccactcttttccccgttcaattctatggtt 7875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 10039463 - 10039195
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || ||| || |||    
T  10039463 acatcagacatactgaaattacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacgtgttgatattaca 10039364  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  10039363 gatttttctgcgattttctaccatgggagcctccttggctccgtttcttga-ccctaaactctccaaaataatccataatcatcaccatatgattaccct 10039265  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  10039264 atcattaaaacgttaatccatcactaacctacctgattaaccactcttttccccgttcaattctatggtt 10039195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 21132981 - 21132714
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| ||||  ||||||  |||    
T  21132981 catcagacatattgaaattacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcatgatttcgacagcatcagacatattgaaattgcag 21132882  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| | |||||||||||||||||||||||||  ||||| | ||||||||||||||||||  |||||||| ||||||||||||| ||||||    
T  21132881 atttttctgcgatttcctaccatgggagcctccttggctccaattcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgatcacccta 21132783  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  21132782 tcattaaaacgttaacccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 21132714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 6743697 - 6743431
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  6743697 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 6743598  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  6743597 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 6743500  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  6743499 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 6743431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 201347 - 201613
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  201347 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 201446  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  201447 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 201544  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| ||||||| |||||||    
T  201545 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattttatggtt 201613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 43694127 - 43694393
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||| || |||| |||     
T  43694127 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacac 43694226  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |        |||| ||||||||||||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  43694227 attttcta-cgattttctaccatgggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 43694324  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||| |||| |||||||||||||||    
T  43694325 tcattaaaacgttaacccatcactaacctacctgattaaccactctttccaccattcaattctatggtt 43694393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 26861637 - 26861392
Alignment:
Q  20 atcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacaga 119  Q
    ||||||||||||||||||||| |||| |||||  || ||||||| ||||  || |||| ||||| |||||| ||||||||| |||||||||||||||| |    
T  26861637 atcagacatactgaaattacagattt-ctgtcggaatcgcctcatgatctgtgaaatcgcctcatgatttctacagcatcagacatgctgaaatcacaaa 26861539  T
Q  120 nnnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctat 219  Q
           ||||| ||||||||||||||||||||||||||||||| ||   | ||||| || |||||||  | | ||||  ||||||||| ||||||||||    
T  26861538 tttttctgcgattttctaccatgggagcctccttggctccgttt-ttctactctaaattcaccaaaatcatacctaatcttcaccatattattaccctat 26861440  T
Q  220 cattagaacgttaatccctcactaacctacctaattaaccactctttt 267  Q
    | ||||||| ||||| | ||| |||||||||  |||| ||||||||||    
T  26861439 cgttagaacattaattcttcattaacctaccagattatccactctttt 26861392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 13361775 - 13361938
Alignment:
Q  137 accatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatcc 236  Q
    |||||| |||| || ||| |||||||| | || |||||||||| |||||||||||| |||| ||||||||||||||||||||||||   |||  |||| |    
T  13361775 accatgagagcgtcgttgactccgtttttcga-ccctaaactcgccaaaattgtccctaatcatcaccatatgattaccctatcatcgtaacactaattc 13361873  T
Q  237 ctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttaccctatg 301  Q
      || |||||||||  |||| ||||||||||||||||| |||| |||||||| ||||||||||||    
T  13361874 tccattaacctaccagattatccactcttttcaccgtttaattttatggttcgctttaccctatg 13361938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 6743854 - 6743753
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  6743854 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagcatcagacatactaaaattaca 6743755  T
Q  118 ga 119  Q
    ||    
T  6743754 ga 6743753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 43694049 - 43694149
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||| |||||| |||||||| ||||||||||||||  |||||| ||||||| ||||| ||||| ||| ||||||| |||| |||| || |||| ||||    
T  43694049 catcagtcatactaaaattacagattttctgtcaaaattgcctcatgatcactagaatcgcctcatgatctcgacagtatcagacatactaaaattacag 43694148  T
Q  119 a 119  Q
    |    
T  43694149 a 43694149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 6743776 - 6743675
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  6743776 catcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 6743677  T
Q  118 ga 119  Q
    ||    
T  6743676 ga 6743675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 201288 - 201333
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctca 63  Q
    ||||||| |||||| |||||||| |||||||||||||| |||||||    
T  201288 acatcagtcatactaaaattacacattttctgtcaaaatcgcctca 201333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 49350 - 49629
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||| | ||||||| ||||| ||||||||||| ||||||| |||||||||||||     
T  49350 catcagacatactgaaattacagattttctgtcaaaatcgcctcatgataattggaatcgcctcatgatttcgacagtatcatacttgctgaaatcacaa 49449  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  49450 atttttctgcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcgtccataatcatcaccatatgattacccta 49548  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  49549 tcattagaacgttaatccctcactaacctacctgattaaccactcttttcaccgttcaattctatggttcactttacccta 49629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: scaffold0104
Description:

Target: scaffold0104; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 14574 - 14854
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| ||||||||||  || || |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||    
T  14574 catcagacatattgaaattacagattttctgtcccaatcggctcacgatcactaggatctcctcatgatttcgacagcatcatacatgctgaaatcacag 14673  T
Q  119 annnnnnn-gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    |        ||||  |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  14674 atattttctgcgaatttctaccatgggagcctccttggctctgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattaccct 14772  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  14773 atcattagaacgttaatccatcactaacctacctgattaaccactcttttccccgttcaattctatggttcacttcacccta 14854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 26650 - 26918
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||    
T  26650 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattaca 26749  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  |||||||| |||| ||| ||||||||||    
T  26750 gatatttctgcgattttctaccatgagagcctccttggctctgtttcttga-ccctaaactctccaaaatcatccataatcatcatcatctgattaccct 26848  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  26849 atcattaaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 26918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 28032 - 28300
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||    
T  28032 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactggaatcgcctcacgatttcgacagcatcatacatgctgatattaca 28131  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||  |||||||| |||| ||| ||||||||||    
T  28132 gatatttctgcgattttctaccatgagagcctccttggctctgtttcttga-ccctaaactctccaaaatcatccataatcatcatcatctgattaccct 28230  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  28231 atcattaaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 28300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 57 - 299
Target Start/End: Original strand, 16632 - 16874
Alignment:
Q  57 cgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnn-gcgatcttctaccatgggagcctccttgg 155  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||        ||||  |||||||||||||||||||||||    
T  16632 cgcctcacgatcactgggatcgcctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgaatttctaccatgggagcctccttgg 16731  T
Q  156 ctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaatt 255  Q
    ||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  16732 ctctgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaacgttaatccatcactaacctacctgatt 16830  T
Q  256 aaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||    
T  16831 aaccactcttttccccgttcaattctatggttcacttcacccta 16874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 265
Target Start/End: Original strand, 7943 - 8189
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| ||||||||||  || || |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||    
T  7943 catcagacatattgaaattacagattttctgtcccaatcggctcacgatcactaggatctcctcatgatttcgacagcatcatacatgctgaaatcacag 8042  T
Q  119 annnnnnn-gcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    |        ||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  8043 atattttctgcgattttctaccatgggagcctccttggctctgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattaccct 8141  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactctt 265  Q
    |||||||||| |||||||| |||||||||||||| ||||| |||||||    
T  8142 atcattagaatgttaatccatcactaacctacctgattaatcactctt 8189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0104; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 57 - 265
Target Start/End: Original strand, 18652 - 18860
Alignment:
Q  57 cgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnn-gcgatcttctaccatgggagcctccttgg 155  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||        ||||  |||||||||||||||||||||||    
T  18652 cgcctcacgatcactgggatcgcctcatgatttcgacagcatcatacatgctgaaatcacagatattttctgcgaatttctaccatgggagcctccttgg 18751  T
Q  156 ctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaatt 255  Q
    ||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  18752 ctctgtttcttga-ccctaaactctccaaaatcgtccataatcatcaccatatgattaccctatcattagaatgttaatccatcactaacctacctgatt 18850  T
Q  256 aaccactctt 265  Q
    || |||||||    
T  18851 aatcactctt 18860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0546 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 10245 - 9980
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| || |||    
T  10245 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacaatttcgacagcatcatacatgctgatattaca 10146  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||  |||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  10145 gatttttctgcgattttctaccatgggagcctccttggctcgatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 10047  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatg 284  Q
    ||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  10046 atcattaaaacgttaatccatcactaacctacctgatcaaccactcttttcaccgttcaattctatg 9980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0109 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 3062 - 3327
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| || |||    
T  3062 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcacaatttcgacagcatcatacatgctgatattaca 3161  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||  |||||| | ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  3162 gatttttctgcgattttctaccatgggagcctccttggctcgatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 3260  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatg 284  Q
    ||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||    
T  3261 atcattaaaacgttaatccatcactaacctacctgatcaaccactcttttcaccgttcaattctatg 3327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 56115164 - 56114896
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||| || |||    
T  56115164 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgaccactgggatcgcctcacgatttcgacagcatcatacatgctgatattaca 56115065  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||  |||||||| |||||||||||||||| ||    
T  56115064 gatttttctgcgattttctaccatgggagcctccttggctccatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattactct 56114966  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  56114965 atcattaaaacgttaatccatcactaacctaactgattaaccactctttccaccgttcaattctatggtt 56114896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 24046826 - 24046614
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| |||||||||||||||||||||||||||||||| || |||||       ||||| |||||||||||||||||||||||||| ||||||||| ||||    
T  24046826 aatcgcctcacgatttcgacagcatcatacatgctgatattacagatttttctgcgattttctaccatgggagcctccttggctctgtttcttga-ccct 24046728  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||    
T  24046727 aaactctccaaaatcatccataatcatcaccatatgattaccctatcattaaaacgttaatccatctctaacctacctgattaaccactcttttcaccgt 24046628  T
Q  274 tcaattctatggtt 287  Q
    ||||||||||||||    
T  24046627 tcaattctatggtt 24046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 11201804 - 11201538
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  11201804 catcagacatactaaaattacacattttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 11201705  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| ||||||| ||||| | |||| | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  11201704 attttct-gcgattttctaccatgggaacctcctttgctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 11201607  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  11201606 tcattaaaacgttaacccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 11201538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 11208535 - 11208269
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  11208535 catcagacatactaaaattacacattttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 11208436  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| ||||||| ||||| | |||| | ||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  11208435 attttct-gcgattttctaccatgggaacctcctttgctccatctcttaa-ccctaaactctccaaaatcatccataaacatcaccatatgattacccta 11208338  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  11208337 tcattaaaacgttaacccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 11208269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 11201881 - 11201795
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| |||  || ||||| ||||| |||||||||||||||| ||||    
T  11201881 catcagacatactaaaattacacattttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagcatcagacat 11201795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 11208612 - 11208526
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||||||||| |||||||| |||||||||||||| ||||||| |||  || ||||| ||||| |||||||||||||||| ||||    
T  11208612 catcagacatactaaaattacacattttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagcatcagacat 11208526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 8574597 - 8574496
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||| ||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  8574597 catcagacatactaaaatgacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattaca 8574498  T
Q  118 ga 119  Q
    ||    
T  8574497 ga 8574496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 8574453 - 8574372
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||| ||||||| |||||||| ||||| |||| ||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  8574453 catcaaacatactaaaattacagattttttgtcgaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 8574372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 54798482 - 54798381
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| |||| |||| ||||||| ||||||| ||| | ||||| |||||||||||||||| |||| || |||| |||    
T  54798482 catcagacatactaaaattacagatttttctgtgaaaatcgcctcatgatcactagaaccgcctcatgatttcgacagcatcagacatactaaaattaca 54798383  T
Q  118 ga 119  Q
    ||    
T  54798382 ga 54798381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 14280703 - 14280769
Alignment:
Q  18 acatcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctca 83  Q
    |||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| |||||    
T  14280703 acatcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctca 14280769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 11208690 - 11208603
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    |||||||  ||||| |||||||| |||||||||||||| ||||||| |||  || ||||| ||||| | || ||||||||||| ||||    
T  11208690 acatcagttatactaaaattacacattttctgtcaaaatcgcctcatgatttctagaatcgcctcatgtttccgacagcatcagacat 11208603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14280802 - 14280846
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctca 63  Q
    ||||||||||||| |||||||| |||||||||| ||| |||||||    
T  14280802 catcagacatactaaaattacagattttctgtcgaaatcgcctca 14280846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 54798404 - 54798360
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctca 63  Q
    ||||||||||||| |||||||| |||||||||| ||| |||||||    
T  54798404 catcagacatactaaaattacagattttctgtcgaaatcgcctca 54798360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 22507 - 22239
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||| |||||| |||||||| |||||||||||||||| || |||    
T  22507 catcagacatactgaaatttacagattttctgtcaaaatcgcctcacgatcactggtatcgcctcactatttcgactgcatcatacatgctgatattaca 22408  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||    
T  22407 gatttttctgcgattttataccatgggagcctccttggctctgtttcttga-ccctaaactctccaaaatcatccataatcatcaccatatgattaccct 22309  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||| ||||||||||| || ||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  22308 atcattaaaacgttaatccatctctatcctacctgattaaccactcttttcacctttcaattctatggtt 22239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 74 - 287
Target Start/End: Complemental strand, 17550 - 17338
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| |||||||||||||||||||||||||||||||| || ||| |       ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  17550 aatcgcctcacgatttcgacagcatcatacatgctgatattacatatttttctgcgattttctaccatgggagcctccttggctccgtttcttga-ccct 17452  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    ||||||||||||||  | |||||| |||||||||||||||||||||||||| ||| ||||||| || ||||||||||| |||||||||||||||||||||    
T  17451 aaactctccaaaatcattcataatcatcaccatatgattaccctatcattaaaactttaatccatctctaacctacctgattaaccactcttttcaccgt 17352  T
Q  274 tcaattctatggtt 287  Q
    ||||||||||||||    
T  17351 tcaattctatggtt 17338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 23292 - 23378
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||||||| |||||||| | |||||||||||| | ||||||||||||||||| ||| ||||| |||||||||||||||| ||||    
T  23292 catcagacatattgaaattatagattttctgtcaacatcgcctcacgatcactgggatcgcctcatgatttcgacagcatcagacat 23378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 17585 - 17549
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaa 55  Q
    |||||||||||||||||||||| ||||||||||||||    
T  17585 catcagacatactgaaattacagattttctgtcaaaa 17549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 42559856 - 42559589
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||| || |||    
T  42559856 catcagacatactgaaatttacaaattttcagtcaaaatcgcctcacgatcactgggatcgcctcacgatttcgacagcatcatacatgctgatattaca 42559757  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||||||| ||||||||| |||||||||    
T  42559756 gatttttctgcgat-ttctaccatgggagcctccttggctccgttttttga-ccctaaactctccaaaatcatccataatcatcaccatacgattaccct 42559659  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  ||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||    
T  42559658 atcattgaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattatatggtt 42559589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 44432586 - 44432853
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||     
T  44432586 catcagacatattgaaattacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcatgatttcgacagcatcagacatgctgaaatcacat 44432685  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||  |||||||| |||||||||||||||| |||    
T  44432686 atttttctgcgattttctaccatgggagcctccttggctccatttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattacacta 44432784  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||| ||| | ||||||||||||||||||| |||||||||||||||    
T  44432785 tcattaaaacgttaacccatcactaacttacttgattaaccactcttttcaccattcaattctatggtt 44432853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 364512 - 364781
Alignment:
Q  19 catcagacatactgaaatt-acatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcac 116  Q
    ||||||||||||||||||| ||| ||||| ||||||||| || |||||||||||||| ||| |||||| |||||||||||||||||||| |||| || ||    
T  364512 catcagacatactgaaatttacagatttttctgtcaaaatcgtctcacgatcactgggatcgcctcacaatttcgacagcatcatacatactgatattac 364611  T
Q  117 agannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccc 216  Q
    |||       | ||| |||||||||||||||||| |||||||| |||||| | ||||||||||||||||||  |||||||| ||||| ||||||||||||    
T  364612 agatttttctgtgattttctaccatgggagcctctttggctccatttcttaa-ccctaaactctccaaaatcatccataatcatcacgatatgattaccc 364710  T
Q  217 tatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  364711 tatcattaaaacgttaatccatcactaacctacctgattaaccactcttttcaccgttcaattctatggtt 364781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 23825866 - 23826132
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| |||||||||  |||||| ||||||| ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  23825866 atcagacatactaaaattacagatttttctgtcaaaattgcctcatgatcactagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 23825965  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  23825966 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 23826063  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| ||||||||  | |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  23826064 tcattaaaacgttaactcatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 23826132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 3698328 - 3698594
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||| ||||| |||| |||||||||||| |||     
T  3698328 atcagacatactaaaattacacatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgattttgacagtatcagacatgctgaaattacac 3698427  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||| ||| ||||||||||||| | |||| | ||||||||||||||||||  |||||||| || |||||||||||||||||    
T  3698428 attttct-gcgattttctaccattggaacctccttggctccatctcttaa-ccctaaactctccaaaatcatccataatcattaccatatgattacccta 3698525  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  3698526 tcattaaaacgttaacccatcactaacctacctgattaaccactcttttcaccattcaattctatggtt 3698594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 26859513 - 26859353
Alignment:
Q  137 accatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatcc 236  Q
    ||||||||||||||||| ||||||||||| || |||||||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||   ||| |    
T  26859513 accatgggagcctcctttgctccgtttctgga-ccctaaactcaccaaaatcgtccctaatcatcaccatatgatttccctatcattagaacaccaattc 26859415  T
Q  237 ctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttaccct 298  Q
     ||| |||||||||  |||| ||||||||||||||||||| |||||||||||||||||||||    
T  26859414 ttcattaacctacccgattatccactcttttcaccgttcagttctatggttcactttaccct 26859353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 21321383 - 21321302
Alignment:
Q  206 tatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21321383 tatgatcaccctatcattaaaatgttaatccatcactaacctacctgattaaccactcttttcaccgttcaattctatggtt 21321302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 20494558 - 20494488
Alignment:
Q  213 accctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctat 283  Q
    |||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||    
T  20494558 accctatcattaaaacgttaatccatcactaacctacatgattaaccactcttttcaccgttcaattctat 20494488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 21325974 - 21325900
Alignment:
Q  213 accctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||||||||| || |||||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||    
T  21325974 accctatcattaaaatgttaatccatcaccaacctacctgattaaccactcttttcaccattcaattctatggtt 21325900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 3698249 - 3698336
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacat 105  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||| ||||| ||||| ||||||||||| |||| ||||    
T  3698249 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagtatcagacat 3698336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 23825788 - 23825888
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| ||||    
T  23825788 catcagtcatactaaaattacacattttctgtcaaaatcgcctcaggatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattacag 23825887  T
Q  119 a 119  Q
    |    
T  23825888 a 23825888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 26220104 - 26220148
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctca 63  Q
    ||||||||||||| |||||||| |||||||||| ||| |||||||    
T  26220104 catcagacatactaaaattacagattttctgtcgaaatcgcctca 26220148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 721 - 989
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| ||| ||| |||||||||||||||||||||||| ||||||| ||  ||    
T  721 catcagacatactgaaatttacagattttctgtcaaaatcgcctcatgatcattgggatcgcctcacgatttcgacagcatcatatatgctgatattgca 820  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
    ||       ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||  |||||||| |||||||||||||||||||    
T  821 gatttttctgcgattttctaccatgggagcctccttggctccgttttttga-ccctaaactctctaaaatcatccataatcatcaccatatgattaccct 919  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||||||  ||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  920 atcattgaaacgttaatccatcactaacctacccgattaaccactcttttcaccgttcaattctatggtt 989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 145; Significance: 3e-76; HSPs: 3)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 74 - 299
Target Start/End: Original strand, 8735 - 8959
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||       ||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  8735 aatcgcctcacgatttcgacatcatcatacatgctgaaatcacagatttttctgcgattttctacgatgggagcctccttggctccgtttcttga-ccct 8833  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||  ||||||||||| || ||| ||||||| |||||||||||||||||||||    
T  8834 aaactctccaaaatcgtccataatcatcaccatatgattaccctatcatttaaacgttaatccatcgctaccctacctgattaaccactcttttcaccgt 8933  T
Q  274 tcaattctatggttcactttacccta 299  Q
    |||||||||||||| |||||||||||    
T  8934 tcaattctatggtttactttacccta 8959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 6171 - 6265
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaat 113  Q
    ||||| |||||||||||||||| |||||||||||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||    
T  6171 catcaaacatactgaaattacagattttctgtcaaaatcgcctcacgatcagtagaatcgcctcacgatttcgacagcatcatacatgctgaaat 6265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 8704 - 8748
Alignment:
Q  23 agacatactgaaattacatattttctgtcaaaaccgcctcacgat 67  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  8704 agacatactgaaattacagattttctgtcaaaatcgcctcacgat 8748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 123888 - 123643
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||| ||||  |||||| ||||    
T  123888 catcagacatattgaaattacagattttctgtcaaaatcgcctcacgatcactgggatcgcctcatgatttcgacagcatcagacatattgaaattacag 123789  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  123788 attttct-gcgattttctaccatgggagcctccttggctccgtttcttaa-ccctaaactctccaaaatcatccataatcatcaccatatgattacccta 123691  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttt 266  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||    
T  123690 tcattaaaacgttaacccatcactaacctacctgattaaccactcttt 123643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 2332460 - 2332193
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||  ||||||| ||| |||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||| ||||  |||||| |||    
T  2332460 catcagacatgttgaaatttacagattttctgtcaaaatctcctcacgatcactgggatcgcctcacgatttcgacagcatcagacatattgaaattaca 2332361  T
Q  118 gannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccct 217  Q
     |       ||||| ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||  |||||||| |||||||| ||||||||||    
T  2332360 tattttct-gcgattttctaccatgggagcctccttggctccatctcttaa-ccctaaactctccaaaatcatccataatcatcaccatgtgattaccct 2332263  T
Q  218 atcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||||||||||||| || ||||||| |||||| ||||||||||||||||||| ||||||| |||||||    
T  2332262 atcattagaacgttaacccatcactaatctacctgattaaccactcttttcaccattcaattatatggtt 2332193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 21542782 - 21543048
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  21542782 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 21542881  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  21542882 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 21542979  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  21542980 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 21543048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 42095341 - 42095075
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| ||||    
T  42095341 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattacag 42095242  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       || || ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  42095241 attttct-gcaattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 42095144  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||| ||||||||| |||||| |||||||||||| |||||||||||||||    
T  42095143 tcattaaaacgttaacccatcacaaacctacctgattaacaactcttttcaccattcaattctatggtt 42095075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 45496670 - 45496855
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||||| ||||||||||          | ||||||||||||    
T  45496670 catcagacatactgaaattacagattttctgtcaaaatcgcctcatgagcactggaatcacctcatgatttcgaca----------tactgaaatcacag 45496759  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacc 215  Q
    |       ||||| |||||| |||| |||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||||||||||||||||    
T  45496760 atttttctgcgattttctactatggaagcctccttggctccgtttcttga-ctctaaactctccaaaatcgtccataatcatcaccatatgattacc 45496855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 45499214 - 45499298
Alignment:
Q  215 cctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggttcactttacccta 299  Q
    |||||||||||| |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  45499214 cctatcattagatcgtttatccatcactaacctacctgattaaccactcttttcaccgttcaattctatggttcactttacccta 45499298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 2332538 - 2332443
Alignment:
Q  19 catcagacatactgaaatt-acatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaat 113  Q
    ||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||| ||  |||||| ||||||||||||||| ||||| ||||||    
T  2332538 catcagacatattgaaatttacagattttctgtcaaaatcgcctcacgatcactgggattgcctcacaatttcgacagcatcagacatgttgaaat 2332443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 21542703 - 21542804
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  21542703 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 21542802  T
Q  118 ga 119  Q
    ||    
T  21542803 ga 21542804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 42095420 - 42095319
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    |||||| |||||| |||||||| ||||| ||||||||| ||||||| ||| ||| ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  42095420 catcagtcatactaaaattacacatttttctgtcaaaatcgcctcatgattactagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 42095321  T
Q  118 ga 119  Q
    ||    
T  42095320 ga 42095319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 39127 - 39393
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  39127 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 39226  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  39227 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 39324  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  39325 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 39393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 39048 - 39149
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  39048 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 39147  T
Q  118 ga 119  Q
    ||    
T  39148 ga 39149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 29596 - 29330
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  29596 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 29497  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  29496 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 29399  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  29398 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 29330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 34997 - 34731
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  34997 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 34898  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  34897 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 34800  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  34799 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 34731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 29675 - 29574
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  29675 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 29576  T
Q  118 ga 119  Q
    ||    
T  29575 ga 29574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 35076 - 34975
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  35076 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 34977  T
Q  118 ga 119  Q
    ||    
T  34976 ga 34975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 174012 - 173746
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    |||||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||||||||||||||||    
T  174012 atcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatgctgaaatcacag 173913  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||||||||||||||| |  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  173912 attttct-gcgattttctaccatgggagcctccttggcttcaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 173815  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  173814 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 173746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 174091 - 173990
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| |||| |||| || |||| |||    
T  174091 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatcagacatactaaaattaca 173992  T
Q  118 ga 119  Q
    ||    
T  173991 ga 173990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 46427 - 46164
Alignment:
Q  23 agacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacagann 121  Q
    ||||||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||| || |||| ||| |      
T  46427 agacatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacacatt 46328  T
Q  122 nnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattaccctatca 221  Q
         ||||| ||||||||||||| |||||||||||||  ||||  | ||||||||||||||||||  |||||||  |||||| ||||||||||||||||    
T  46327 ttct-gcgattttctaccatgggaacctccttggctccaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattaccctatca 46230  T
Q  222 ttagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    ||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  46229 ttaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 46164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 51834 - 51568
Alignment:
Q  20 atcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| |||||| |||||||| ||||| ||||||||| ||||||| |||  || ||||| ||||| ||||||||||| |||| |||| || |||| |||     
T  51834 atcaggcatactaaaattacagatttttctgtcaaaatcgcctcatgatttctagaatcgcctcatgatttcgacagtatcagacatcctaaaattacac 51735  T
Q  119 annnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccctaaactctccaaaattgtccataattatcaccatatgattacccta 218  Q
    |       ||||| ||||||||||||| |||||||||||||  ||||  | ||||||||||||||||||  |||||||  |||||| |||||||||||||    
T  51734 attttct-gcgattttctaccatgggaacctccttggctccaattctcaa-ccctaaactctccaaaatcatccataaacatcaccgtatgattacccta 51637  T
Q  219 tcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgttcaattctatggtt 287  Q
    |||||| |||||||| || |||||||||||||| |||||| |||||||||||| |||||||||||||||    
T  51636 tcattaaaacgttaacccatcactaacctacctgattaacaactcttttcaccattcaattctatggtt 51568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 51913 - 51831
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| ||||||||||| ||||    
T  51913 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacagtatca 51831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 46509 - 46432
Alignment:
Q  18 acatcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacag 95  Q
    ||||||| |||||| |||||||| |||||||||||||| ||||||| ||||||  ||||| ||||| |||||||||||    
T  46509 acatcagtcatactaaaattacacattttctgtcaaaatcgcctcatgatcaccagaatcgcctcatgatttcgacag 46432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0601 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 74 - 306
Target Start/End: Complemental strand, 4522 - 4291
Alignment:
Q  74 aatcacctcacgatttcgacagcatcatacatgctgaaatcacagannnnnnngcgatcttctaccatgggagcctccttggctccgtttcttgagccct 173  Q
    |||| ||||| ||||| |||||||||| |||||| |||||||||||       ||||| ||| || ||| |||  |||||||||  |||| || | ||||    
T  4522 aatcgcctcatgattttgacagcatcagacatgcagaaatcacagatttttctgcgattttccactatgcgaggttccttggctatgttt-ttcaaccct 4424  T
Q  174 aaactctccaaaattgtccataattatcaccatatgattaccctatcattagaacgttaatccctcactaacctacctaattaaccactcttttcaccgt 273  Q
    |||||| ||||||| |||| |||| |||||| |||||||| |||||||||| |||  |||| | ||| ||||| |||  ||||  ||| | |||||||||    
T  4423 aaactcaccaaaatcgtccctaatcatcaccgtatgattaacctatcattataaccgtaattcttcattaaccaaccggattattcacccctttcaccgt 4324  T
Q  274 tcaattctatggttcactttaccctatgctact 306  Q
    | ||||||||||||||||||| |||||| ||||    
T  4323 ttaattctatggttcactttatcctatgttact 4291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 116817 - 116918
Alignment:
Q  19 catcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcaca 117  Q
    ||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| |||    
T  116817 catcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcaaacatactaaaattaca 116916  T
Q  118 ga 119  Q
    ||    
T  116917 ga 116918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 116895 - 116995
Alignment:
Q  19 catcagacatactgaaattacatattttctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatcatacatgctgaaatcacag 118  Q
    ||||| ||||||| |||||||| ||||| |||| ||| ||||||| ||||||| ||||| ||||| |||||||||||||||| |||| || |||| ||||    
T  116895 catcaaacatactaaaattacagattttttgtcgaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatcagacatactaaaattacag 116994  T
Q  119 a 119  Q
    |    
T  116995 a 116995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 121 - 38
Alignment:
Q  18 acatcagacatactgaaattacatatttt-ctgtcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    |||||||||||||| |||||||| ||||| ||||||||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  121 acatcagacatactaaaattacagatttttctgtcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 38  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 72221 - 72271
Alignment:
Q  50 tcaaaaccgcctcacgatcactggaatcacctcacgatttcgacagcatca 100  Q
    |||||| ||||||| ||||||| ||||| ||||| ||||||||||||||||    
T  72221 tcaaaatcgcctcatgatcactagaatcgcctcatgatttcgacagcatca 72271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University