View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11022_high_29 (Length: 237)
Name: NF11022_high_29
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_high_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 36776068 - 36775853
Alignment:
| Q |
8 |
gtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaaca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36776068 |
gtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaaca |
36775969 |
T |
|
| Q |
108 |
aacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaatactattttgttgatcat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36775968 |
aacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaatactattttgttgatcat |
36775869 |
T |
|
| Q |
208 |
taggaatcaaaggaac |
223 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
36775868 |
taggaatcaaaggaac |
36775853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 36788901 - 36788735
Alignment:
| Q |
1 |
tagcaatgtagcaagggtcccttaaaagaaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcact |
100 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||||||||| || ||||||| |||| |||| ||||||||| | ||||||||||||| |||| |
|
|
| T |
36788901 |
tagcaatgtaacaagggtcccttaacaaaaaagaccttgtagctctataatctttgcaaaacctcaaatcgtgaaccaacttatccttatttttcccact |
36788802 |
T |
|
| Q |
101 |
caaaacaaacaagtgttgtaaatcttttgatgcttcatttgaaccttgatatatgttcatgttccta |
167 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36788801 |
caaaacaaacaagtgtggtaaatcttgtgatgcttcatttgaaccttgatatatgttcatgttccta |
36788735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 212
Target Start/End: Complemental strand, 36760907 - 36760715
Alignment:
| Q |
29 |
aaaagaccttgtagctctagaagctttgcataacccaaaattgtgaaccaagtaatccttatttttctcactcaaaacaaacaagtgttgtaaatctttt |
128 |
Q |
| |
|
|||||||||||||| ||||||| | ||||| ||| ||| | |||||||| ||||||||||| | |||||||||||||| |||||| |||||| | |
|
|
| T |
36760907 |
aaaagaccttgtagttctagaatccttgcaaaacttcaaactatgaaccaaataatccttattcacacctctcaaaacaaacaactgttgtgaatcttgt |
36760808 |
T |
|
| Q |
129 |
gatgcttcatttgaacc---ttgatatatgttcatgttcctatagac------aataaccttgttgctaatactattttgttgatcattagga |
212 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||| | | |||| || ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36760807 |
gatgcttcatttgaagctaattgatttatgttcatgtttccagagacaacgttaacaaccttgttgctaatactattttgttgatcactagga |
36760715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 190
Target Start/End: Complemental strand, 36797193 - 36797138
Alignment:
| Q |
135 |
tcatttgaaccttgatatatgttcatgttcctatagacaataaccttgttgctaat |
190 |
Q |
| |
|
||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
36797193 |
tcatttgaaacttgatttatgttcatgttcccagagacacaaaccttgttgctaat |
36797138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University