View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11022_high_31 (Length: 219)

Name: NF11022_high_31
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11022_high_31
NF11022_high_31
[»] chr3 (2 HSPs)
chr3 (14-181)||(35471694-35471863)
chr3 (14-149)||(50415176-50415312)
[»] chr8 (2 HSPs)
chr8 (14-181)||(1632790-1632959)
chr8 (78-150)||(35932420-35932492)
[»] chr7 (4 HSPs)
chr7 (16-181)||(40690860-40691027)
chr7 (14-126)||(32124485-32124598)
chr7 (14-149)||(37952340-37952476)
chr7 (122-181)||(32126751-32126810)
[»] scaffold0015 (1 HSPs)
scaffold0015 (14-149)||(83288-83425)
[»] scaffold0004 (1 HSPs)
scaffold0004 (30-181)||(106363-106516)
[»] chr4 (1 HSPs)
chr4 (14-149)||(4982219-4982356)
[»] chr6 (1 HSPs)
chr6 (14-149)||(8675261-8675397)
[»] chr5 (1 HSPs)
chr5 (78-149)||(42318450-42318521)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 35471694 - 35471863
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccg 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||| |||| ||||||    
T  35471694 agagagatgatgaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtttccatttgccaggcagagcgcatgcagcacacgcgccg 35471793  T
Q  112 acagggcgcgtcgcggacaggaagacacggagagagaagcnnnnnnnggataatgcaggacacgtggtgc 181  Q
    |||||||||||||| ||||||||||| |||||||||||         |||||||||||||||||||||||    
T  35471794 acagggcgcgtcgcagacaggaagacgcggagagagaaatgttttttggataatgcaggacacgtggtgc 35471863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 50415176 - 50415312
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttg-ccaggcagagcgcgtgcaccacatgcgcc 110  Q
    |||||| |||| ||||| ||||||  ||| || |||||||||||||| ||||||||||||||  |||||| ||| ||| ||||||||||  ||| |||||    
T  50415176 agagaggtgattaatggattcaacatgtttaatatctgaccgagggg-ccacgcggcgcgttttcatttggccacgcacagcgcgtgcaatacacgcgcc 50415274  T
Q  111 gacagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    ||||||||||||||| || |||||||| |||||||||||    
T  50415275 gacagggcgcgtcgctga-aggaagacgcggagagagaa 50415312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 1632790 - 1632959
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcg--ttcatttgccaggcagagcgcgtgcaccacatgcgccg 111  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||| ||||  |||||    
T  1632790 agagagaagatgaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgttttcatttgccaggcagagcacgagcagcacactcgccg 1632889  T
Q  112 acagggcgcgtcgcggacaggaagacacggagagagaagcnnnnnnnggataatgcaggacacgtggtgc 181  Q
    ||||||||||| |||||||||||||| | |||||||||||       |||||||||||||||||||||||    
T  1632890 acagggcgcgttgcggacaggaagacgcagagagagaagctttttttggataatgcaggacacgtggtgc 1632959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 35932492 - 35932420
Alignment:
Q  78 tttgccaggcagagcgcgtgcaccacatgcgccgacagggcgcgtcgcggacaggaagacacggagagagaag 150  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||||||| | |||||||| ||||||||||||    
T  35932492 tttgccaggcagagcgcgtgtaacacacgcgccgacaaggcgcgtcgcgcaaaggaagacgcggagagagaag 35932420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 40691027 - 40690860
Alignment:
Q  16 agagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccgac 113  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||||    
T  40691027 agagatgatgaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtttccatttgccaggcagagcgcgtgcagcacacgcgccgac 40690928  T
Q  114 agggcgcgtcgcggacaggaagacacggagagagaagcnnnnnnnggataatgcaggacacgtggtgc 181  Q
    |||||||||||| |||||| |||| | |||||| ||         |||||||||||||||||||||||    
T  40690927 agggcgcgtcgcagacaggcagacgcagagagataaatgttttttggataatgcaggacacgtggtgc 40690860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 32124485 - 32124598
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccg 111  Q
    ||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||| ||  ||||||||| || ||||||||||| |||| ||||||    
T  32124485 agagagatgatgaatggtttcaactagttgaaaatctgat-gagggggccacgcggcgcattttcatttgccaagctgagcgcgtgcagcacacgcgccg 32124583  T
Q  112 acagggcgcgtcgcg 126  Q
    |||||||||||||||    
T  32124584 acagggcgcgtcgcg 32124598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 37952476 - 37952340
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttg-ccaggcagagcgcgtgcaccacatgcgcc 110  Q
    |||||| |||| ||||| ||||||  ||| || |||||||||||||| |||||||| |||||  |||||| ||| ||| ||||||||||  ||| |||||    
T  37952476 agagaggtgattaatggattcaacatgtttaatatctgaccgagggg-ccacgcggggcgttttcatttggccacgcacagcgcgtgcaatacacgcgcc 37952378  T
Q  111 gacagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    ||||||||||||||| || |||||||  |||||||||||    
T  37952377 gacagggcgcgtcgctga-aggaagatgcggagagagaa 37952340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 32126751 - 32126810
Alignment:
Q  122 tcgcggacaggaagacacggagagagaagcnnnnnnnggataatgcaggacacgtggtgc 181  Q
    ||||||| |||||||| |||||||||||||       |||||||||||||||||||||||    
T  32126751 tcgcggaaaggaagacgcggagagagaagctttttttggataatgcaggacacgtggtgc 32126810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 83288 - 83425
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccg 111  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| |||| ||||||    
T  83288 agagagatgatgaatggtttcaactagttgaaaatctgaccgagggggccacgtggcgcgtttccatttgccaggcagagcgcgtgcagcacacgcgccg 83387  T
Q  112 acagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    |||||||||||| | |||| |||||| |||||||||||    
T  83388 acagggcgcgtcacagacaagaagacgcggagagagaa 83425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 106516 - 106363
Alignment:
Q  30 gtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccgacagggcgcgtcgcgg 127  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||| |  ||||||||||| |||| ||||||||||||||||||||||    
T  106516 gtttcaactagttgaaaatctgacggagggggccacgcggcgcgttttcatttgccaagttgagcgcgtgcagcacacgcgccgacagggcgcgtcgcgg 106417  T
Q  128 acaggaagacacggagagagaagcnnnnnnnggataatgcaggacacgtggtgc 181  Q
    | || ||||| |||||||||||||       |||||||||||||||||||||||    
T  106416 aaagaaagacgcggagagagaagctttttttggataatgcaggacacgtggtgc 106363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 4982356 - 4982219
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttgccaggcagagcgcgtgcaccacatgcgccg 111  Q
    ||||||||||| ||||||||||||||||||||||||| |  |||||||||||| | ||||||  |||||| ||||||||||||||||| |||| ||||||    
T  4982356 agagagatgatgaatggtttcaactagttgaaaatctaattgagggggccacgtgacgcgtttccatttgtcaggcagagcgcgtgcagcacacgcgccg 4982257  T
Q  112 acagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    | |||||||||| | |||| |||||| |||| ||||||    
T  4982256 atagggcgcgtcacagacaagaagacgcggaaagagaa 4982219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 8675397 - 8675261
Alignment:
Q  14 agagagatgataaatggtttcaactagttgaaaatctgaccgagggggccacgcggcgcgtt--catttg-ccaggcagagcgcgtgcaccacatgcgcc 110  Q
    |||||| |||| ||||| ||||||  ||| || |||||||||||||| ||||||||||||||  |||||| ||| ||| ||||||||||  ||| |||||    
T  8675397 agagaggtgattaatggattcaacatgtttaatatctgaccgagggg-ccacgcggcgcgttttcatttggccacgcacagcgcgtgcaatacacgcgcc 8675299  T
Q  111 gacagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    ||||||||||||||| || |||||||| |||||||||||    
T  8675298 gacagggcgcgtcgctga-aggaagacgcggagagagaa 8675261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 42318521 - 42318450
Alignment:
Q  78 tttgccaggcagagcgcgtgcaccacatgcgccgacagggcgcgtcgcggacaggaagacacggagagagaa 149  Q
    |||||||||||||||||||| | |||| ||||||||| ||||||||||| | |||||||| |||||||||||    
T  42318521 tttgccaggcagagcgcgtgtaacacacgcgccgacaaggcgcgtcgcgcaaaggaagacgcggagagagaa 42318450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University