View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_12 (Length: 448)
Name: NF11022_low_12
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 33160302 - 33160655
Alignment:
| Q |
1 |
aagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcataaattctaat |
100 |
Q |
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| T |
33160302 |
aagaaaaagagatgccattaaggcacccacaaaagcagatagtatatagactataccaatccttactgcaaattaaaaacaaaacgtcataaattctaat |
33160401 |
T |
|
| Q |
101 |
aacaagaaagcatttcaatatgcaannnnnnn-caatttgcatctataaagcagagaacggtggacacaactctaacacatcgacaccgataatattttg |
199 |
Q |
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| T |
33160402 |
aacaagaaagcatttcaatatgcaattttttttcaatttgcatctataaagcagagaacggtggacacaactctaacgcatcgacaccgataatattttg |
33160501 |
T |
|
| Q |
200 |
agaaaataaatcctttgaatgtatccacatgcgtcagtctcgtgtcggacaccaaacatgccttcaatacgcaatgtcattgctacatagctttgcatca |
299 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160502 |
agaaaataaatcctttgaatgtagccacatgcgtcagtctcgtgtcggacaccaaacatgccttcaatacgcaatgtcattgctacatagctttgcatca |
33160601 |
T |
|
| Q |
300 |
tttcaatcaattggacttatgcagcaccaaccgattaaatgtgtatccggtgtc |
353 |
Q |
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| T |
33160602 |
tttcaatcaattggacttatgcagcaccaaccgattaaatgtgcatccggtgtc |
33160655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 25635166 - 25635129
Alignment:
| Q |
169 |
actctaacacatcgacaccgataatattttgagaaaat |
206 |
Q |
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||||||||| |||||||||||||||||||||| ||||| |
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| T |
25635166 |
actctaacatatcgacaccgataatattttgataaaat |
25635129 |
T |
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