View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_14 (Length: 416)
Name: NF11022_low_14
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 15 - 308
Target Start/End: Original strand, 41674310 - 41674593
Alignment:
| Q |
15 |
agagactttgtttgattaagagagtaacacctataagtaa--ttatttggttttgtgatttgtttggccatgtcggcacttgcaagttggtgggataaag |
112 |
Q |
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| T |
41674310 |
agagactttgtttgattaagagagtaacacctataagtaaaattatttggttttgtgatttgtttggccatgtcggcacttgcaagt------------- |
41674396 |
T |
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| Q |
113 |
taggcgcgcgtagataccagaataaatacctagtataactacatgcgataatatgttgttttagagagcagacaagnnnnnnnngagattgagatgcggt |
212 |
Q |
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| T |
41674397 |
-aggcgcgcgtagataccagaataaatacctagtataactacatgcgataatatgttgttttagagagaagacaagaaaaaaaagagattgagatgcggt |
41674495 |
T |
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| Q |
213 |
ggcaccagtagaggattatcactcactgaggat-gatattatattatatttaaat-aaaaattgatgtcgatgaagctaaaatctagagttactttta |
308 |
Q |
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| T |
41674496 |
ggcaccagtagaggattatcactcactgaggatggatattatatttaaattaaataaaaaattgatgtcgatgaagctaaaatctagagttactttta |
41674593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 41674621 - 41674658
Alignment:
| Q |
364 |
ttttctctttccatatctagttccatgacgtcattcat |
401 |
Q |
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| T |
41674621 |
ttttctctttccatatctagttccatgacgtcattcat |
41674658 |
T |
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