View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_15 (Length: 411)
Name: NF11022_low_15
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 68 - 396
Target Start/End: Original strand, 34382041 - 34382365
Alignment:
| Q |
68 |
tgaatacatggaccctgagggtggctggatggtaccatccgtggccgcggttgatgttggtccaatgttgaatttttggtggttactggtttgtgcaaag |
167 |
Q |
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| T |
34382041 |
tgaatacatggaccctgagggtggctggatggtactatccgtggccgcggttgatgttggtccaatgttgaatttttggtggtaactggtttgtgcaaag |
34382140 |
T |
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| Q |
168 |
aaggagattggtgatgatgaaactaaatggattcataggaaagtaattggcttagctgttgtgtttgagctttcttaaaaaatgagtattgaagtgtgtt |
267 |
Q |
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| T |
34382141 |
aaggagattgatgatgatgaaattaaatggattcataggaaagtaattggcttagctgttgtgtttgagctttcttaaaaaatgagtgttgaagtgtgtt |
34382240 |
T |
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| Q |
268 |
tcggttttttgtgtgaaagatgatagatttctttttgctgggaaaatagatttcacatgcatttatctctttttgaaggaatttcacatttatcttcttc |
367 |
Q |
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| T |
34382241 |
tcggttttttgtgtgaaagatgatagatttctttttgctgggaaaatagatttca----catttatctctttttgaaggaatttcacaattatcttcttc |
34382336 |
T |
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| Q |
368 |
tttggtgggagtatatatagagagaaaac |
396 |
Q |
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| T |
34382337 |
tttggtgggagtatatagagagagaaaac |
34382365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 34367666 - 34367742
Alignment:
| Q |
215 |
tggcttagctgttgtgtttgagctttcttaaaaaatgagtattgaagtgtgtttcggttttttgtgtgaaagatgat |
291 |
Q |
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| T |
34367666 |
tggcttagatgttgtgttttagctttcataaaaaatgagtgtcgaagggtgtttcggttttttgtgtgaaaaatgat |
34367742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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