View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_16 (Length: 407)
Name: NF11022_low_16
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 36776183 - 36776584
Alignment:
| Q |
1 |
ttgttgtattatatttcgtttatgtctatggtattagtgatcattttnnnnnnnnnnnngtctatggtattgccaattacacaactaacctatagtttaa |
100 |
Q |
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| T |
36776183 |
ttgttgtattatatttcttttatgtctatggtattattgatcattttaaaacaaaaaa-gtctatggtattgccaattacacaactaacctatagtttaa |
36776281 |
T |
|
| Q |
101 |
ggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatattcttctacattcatataacattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36776282 |
ggttcatctatataactcgttttgacagtcttgtcatcatgcttaaattacgatcattatatttgaacacttcatattcttctacattcatataacattg |
36776381 |
T |
|
| Q |
201 |
tat--------tttatctctctttctatatga--nnnnnnnnaaaatcttcgtataagaattgtaacttatcacatcatctcctctaatctttctccctc |
290 |
Q |
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||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36776382 |
tattttatctctttatctctctttctatatgattttttcttttaaatcttcgtataataattgtaacttatcacatcatcttctctaatctttctccctc |
36776481 |
T |
|
| Q |
291 |
gagaaacataaactcatatgggtgtgcatcaaacaattttctttaaataatcatgtttattttccaactttattgatgttgtatctaacttcaagtgatg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
36776482 |
gagaaacataaactcatatgggtgtgcatcaaacaattttctttaaataatcatgtttattttccaactttattgatgttgtatctaacttcaaatggtg |
36776581 |
T |
|
| Q |
391 |
tcc |
393 |
Q |
| |
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||| |
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| T |
36776582 |
tcc |
36776584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 36789289 - 36789412
Alignment:
| Q |
259 |
tatcacatcatctcctctaatctttctccctcgagaaacataaactcatatgggtgtgcatcaaacaattttctttaaat----aatcatgtttattttc |
354 |
Q |
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||||||||||| | ||||||| |||||| ||||||| ||| |||||||||||||| || |||||| ||| || |||| |||||||||| |||| |
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| T |
36789289 |
tatcacatcattttctctaatatttctctatcgagaagtatacactcatatgggtgtacaccaaacattttcctataaactatcaatcatgttttctttc |
36789388 |
T |
|
| Q |
355 |
caactttattgatgttgtatctaa |
378 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
36789389 |
caactttattgatgttgtatctaa |
36789412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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