View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_17 (Length: 404)
Name: NF11022_low_17
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 390
Target Start/End: Complemental strand, 14282160 - 14281789
Alignment:
| Q |
19 |
tttggaactggaactgttagagggactcctatgaaagccggcacggtttgtagaataacttcgattatcaagattcttcaagagcctctgaggactttcc |
118 |
Q |
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|||||||||| |||| ||| ||| |||||| |||| |||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282160 |
tttggaactgcaacttttataggaactcctttgaaggccggcacagtttttacaataacttcgattatcaagattcttcaagagcctctgaggactttcc |
14282061 |
T |
|
| Q |
119 |
ctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14282060 |
ctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagaga |
14281961 |
T |
|
| Q |
219 |
tgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggta |
318 |
Q |
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| T |
14281960 |
tgagagttgtggtggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggta |
14281861 |
T |
|
| Q |
319 |
attaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
390 |
Q |
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| T |
14281860 |
attaagaaaggggaccatgctgctattgtaggaacagttggatcgggcaagtcttcattattggcttctgtg |
14281789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 45 - 390
Target Start/End: Complemental strand, 14320283 - 14319938
Alignment:
| Q |
45 |
tcctatgaaagccggcacggtttgtagaataacttcgattatcaagattcttcaagagcctctgaggactttccctcaggctcttatcaatatttctcaa |
144 |
Q |
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| T |
14320283 |
tcctttgaatgccggcactgtatttacaataacttcgattatcaagattcttcaagagcctgtgaggactttcccgcaagctcttataatgatttctcaa |
14320184 |
T |
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| Q |
145 |
gcaactatatctttagggaggttggatgagttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctg |
244 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||||||| |||| ||||| |||||||||||| | |
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| T |
14320183 |
gcaacaatatctttagggaggttggatgagttcatggtgagtaaggaaatggatgagaatgcagtgcaaagagaggagaattgtgatggtgatgtagccg |
14320084 |
T |
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| Q |
245 |
tggagataaaagatgggaaattttcttgggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctat |
344 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
14320083 |
tggagataaaagatgggaaattttcatgggatgataaggatgagaatgaggcgttgacagtggaagagttggtaattaagaaaggggaccgtgctgctat |
14319984 |
T |
|
| Q |
345 |
tgtaggaacagttggatcaggcaagtcttcattattggcttctgtg |
390 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
14319983 |
tgtaggaactgttggttcaggcaagtcttcattattggcttctgtg |
14319938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 85 - 390
Target Start/End: Complemental strand, 14303852 - 14303547
Alignment:
| Q |
85 |
atcaagattcttcaagagcctctgaggactttccctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatgagttcatgatga |
184 |
Q |
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|||||||| |||||||||||| |||| ||||| || |||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||| |
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| T |
14303852 |
atcaagatacttcaagagcctatgagtacttttccacaggctcttatcaatatttcgcaagcaacgatatcattagggaggttggataagttcatgatga |
14303753 |
T |
|
| Q |
185 |
gtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttgggatgataacga |
284 |
Q |
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|||||||||||||||| | ||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14303752 |
gtaaggaaatggatgagaatgcagtgcaaagagaggagaactgtaatggtgatgtagctgtggagataaaagatgggaaattttcttgggatgatatgga |
14303653 |
T |
|
| Q |
285 |
tgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtcttcattattggct |
384 |
Q |
| |
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|||||||||||| ||| |||| | || ||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
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| T |
14303652 |
tgagaatgaggctttgcgagttaaggaattggtgattaagaaaggggaccatgctgctgttgtaggaactgttggatcaggcaagtcttcattactggct |
14303553 |
T |
|
| Q |
385 |
tctgtg |
390 |
Q |
| |
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|||||| |
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| T |
14303552 |
tctgtg |
14303547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 73 - 390
Target Start/End: Complemental strand, 25884937 - 25884620
Alignment:
| Q |
73 |
ataacttcgattatcaagattcttcaagagcctctgaggactttccctcaggctcttatcaatatttctcaagcaactatatctttagggaggttggatg |
172 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
25884937 |
ataacttcgattatcaagatacttcaagagcctttgaggacttttcctcaggctcttatcatgatttctcaagcaacaatatctttagggaggttggatg |
25884838 |
T |
|
| Q |
173 |
agttcatgatgagtaaggaaatggatgatagtgctgtgcaaagagatgagagttgtgttggtgatgtagctgtggagataaaagatgggaaattttcttg |
272 |
Q |
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||||||||| |||||||||||||||||| | ||| |||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||| || || |
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| T |
25884837 |
agttcatgacgagtaaggaaatggatgagaatgcagtgcaacgagaggagaattgtgatggtgatgtagctgtggagataaaagatgggaaattctcatg |
25884738 |
T |
|
| Q |
273 |
ggatgataacgatgagaatgaggcgttgacagttgaagagttggtaattaagaaaggggaccatgctgctattgtaggaacagttggatcaggcaagtct |
372 |
Q |
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|||||||||||||||||| || || ||| |||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||| |||||| |
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| T |
25884737 |
ggatgataacgatgagaacgacgctctgagagttgaagagttggtaattaagaaaggggatcatgctgctgttgtaggaactgttggttcagggaagtct |
25884638 |
T |
|
| Q |
373 |
tcattattggcttctgtg |
390 |
Q |
| |
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|||||||||||||||||| |
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| T |
25884637 |
tcattattggcttctgtg |
25884620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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