View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_18 (Length: 401)
Name: NF11022_low_18
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 377
Target Start/End: Complemental strand, 53311314 - 53310974
Alignment:
| Q |
12 |
agagaatgtgaactttatttcactctatcatagaatataaagctgcgaggtgtttgttttatcccgaatttctcatgaatttgcaccaattaaaacctgt |
111 |
Q |
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| T |
53311314 |
agagaatgtgaactttatttcactctatcatagaatataaagctgcgaggtgttt----tatcccgaatctctcatgaatttgtaccaattaaaacctgt |
53311219 |
T |
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| Q |
112 |
tatggctggaaaagaaggaggtaatgggtgttattaaggtcaaactttcaagtgtgcagtgctattgattctattgtatgtaatctcctcgatcgtgata |
211 |
Q |
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| T |
53311218 |
tatggccggaaaagaaggaggtaatgggtgttattaaggtcaaactttcaagtgtgcagtgctattgattctattgtatgtaatctcc----tcgtgata |
53311123 |
T |
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| Q |
212 |
ctatttgttgttatggtaagcattttcctatccaaaaaatagagtgataattacatttcattctactctgggtcagttgttttaaaatattcaaacaaag |
311 |
Q |
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| T |
53311122 |
ctatttgttgttatggtaagcattttcctgtccaaaaaatagagtgataattacatttcattctactctgg-----------------attcaaacaaag |
53311040 |
T |
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| Q |
312 |
cataccaaaagagggaataagagagaaatgaatgattgatttcatgtttttccttagttatttcat |
377 |
Q |
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| T |
53311039 |
cataccaaaagagggagtaagagagaaatgaatgattgatttcatgtttttccttagttatttcat |
53310974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 9009701 - 9009628
Alignment:
| Q |
96 |
accaattaaaacctgttatggctggaaaagaaggaggtaatgggtgttattaaggtcaaactttcaagtgtgca |
169 |
Q |
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| T |
9009701 |
accaagtaaaacttgttatggccggaaaacaaggaggttgtgggtgttattatggtcaaactttcaagtgtgca |
9009628 |
T |
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