View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11022_low_2 (Length: 683)

Name: NF11022_low_2
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11022_low_2
NF11022_low_2
[»] chr2 (3 HSPs)
chr2 (1-180)||(24453901-24454080)
chr2 (180-231)||(24453826-24453877)
chr2 (625-665)||(24453793-24453833)
[»] chr5 (4 HSPs)
chr5 (55-173)||(13457814-13457933)
chr5 (55-173)||(31233476-31233594)
chr5 (180-237)||(31233625-31233682)
chr5 (181-236)||(13457727-13457782)
[»] chr3 (3 HSPs)
chr3 (67-173)||(23233752-23233859)
chr3 (55-136)||(33330676-33330755)
chr3 (181-237)||(23233891-23233946)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 4e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 24454080 - 24453901
Alignment:
Q  1 aacagaaaagcacaacagccaaaacagagtccctgccgcaaaacaaaagcaggatgttggttttatagggataggagagaaaaagtattatggaaatgtt 100  Q
    ||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24454080 aacagaaaagcgcagcagccaaaacacagtccctgccgcaaaacagaagcaggatgttggttttatagggataggagagaaaaagtattatggaaatgtt 24453981  T
Q  101 atattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagttaagtactctataaatagaggtaaaac 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  24453980 atattgaaagacagaaatatgtttataacatcaaacataccattacaaatagttcagtactctataaatagagctaaaac 24453901  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 24453877 - 24453826
Alignment:
Q  180 ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaa 231  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  24453877 ccctaaaattattgcctttaaaacaaaacataattgaaaaacaactccctaa 24453826  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 625 - 665
Target Start/End: Complemental strand, 24453833 - 24453793
Alignment:
Q  625 ctccctaacacttcccaaaggttcaaccaaacccgcagaaa 665  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24453833 ctccctaacacttcccaaaggttcaaccaaacccgcagaaa 24453793  T

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Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 13457933 - 13457814
Alignment:
Q  55 tgttggttttata-gggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagt 153  Q
    ||||||||||| | |||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| || ||||||||||| | |    
T  13457933 tgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattggaagacagaaatatgtttataacatcaagcacaccattacaaacact 13457834  T
Q  154 taagtactctataaatagag 173  Q
    | ||| ||||||||||||||    
T  13457833 tcagtgctctataaatagag 13457814  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 31233476 - 31233594
Alignment:
Q  55 tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagtt 154  Q
    ||||||||||| ||||||| ||||||||||   ||||| ||||| ||||||   ||||| ||||||||||||||| |||| || ||||||||||| | ||    
T  31233476 tgttggttttaaagggatatgagagaaaaaaatttatgaaaatgatatatttgtagacaaaaatatgtttataacatcaagcacaccattacaaacactt 31233575  T
Q  155 aagtactctataaatagag 173  Q
     ||| || |||||||||||    
T  31233576 cagtgctttataaatagag 31233594  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 31233625 - 31233682
Alignment:
Q  180 ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc 237  Q
    |||||||||||||| | | |||||||||||||||||||||||||||||||||| ||||    
T  31233625 ccctaaaattattgtcttcaaaacaaaacataattgaaaaacaactcactaatatctc 31233682  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 13457782 - 13457727
Alignment:
Q  181 cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtct 236  Q
    ||||||||||||  | ||||||||||| |||| |||||||||||||||||||||||    
T  13457782 cctaaaattattatctttaaaacaaaagataactgaaaaacaactcactaatgtct 13457727  T

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Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 67 - 173
Target Start/End: Original strand, 23233752 - 23233859
Alignment:
Q  67 agggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattaca-aatagttaagtactctat 165  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||||||||||| ||||||||| ||||||| ||||||||| |||| || ||| | ||||    
T  23233752 agggatatgagagaaaaagtattatggaaatgatatattagaagacagaaataagtttataacatcaaacacaccattacacaatactttagtgccctat 23233851  T
Q  166 aaatagag 173  Q
    ||||||||    
T  23233852 aaatagag 23233859  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 33330755 - 33330676
Alignment:
Q  55 tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaac 136  Q
    ||||||||||| ||| ||| ||||||||| ||| ||||||||||  |||| | |||||||||||||||||||||| ||||||    
T  33330755 tgttggttttaaagg-atatgagagaaaa-gtaatatggaaatgacatatcggaagacagaaatatgtttataacatcaaac 33330676  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 23233891 - 23233946
Alignment:
Q  181 cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc 237  Q
    ||||||||||||| | |||||||||||||||| || ||||||||||||| |||||||    
T  23233891 cctaaaattattgtctttaaaacaaaacataactg-aaaacaactcactgatgtctc 23233946  T

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