View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_20 (Length: 373)
Name: NF11022_low_20
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 2305498 - 2305834
Alignment:
| Q |
21 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2305498 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctacaaatcacaacacaacctcgtctaactataatggattttgttcttagca |
2305597 |
T |
|
| Q |
121 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaaga |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2305598 |
acctaataaactcaacaacaattgcactcctttatttcattattcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaaga |
2305697 |
T |
|
| Q |
221 |
ggcgccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagagtcttaggtaccttagctgataaa |
320 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2305698 |
ggcaccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagggtcttaggtaccttagctgataaa |
2305797 |
T |
|
| Q |
321 |
tatggaccattattcaccatcaagcttggttataaac |
357 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
2305798 |
tatggaccattattcaccatcaagcttggttctaaac |
2305834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 349
Target Start/End: Original strand, 2337821 - 2338147
Alignment:
| Q |
21 |
tatatatattaagctaatactaatggcacatctatatccactaatctcctaca-aatcacaacacaacctcgtctaactataatggattttgttcttagc |
119 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||| |||||||| |
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| T |
2337821 |
tatatatattaagctaatactcatggcacatctatatccaccaatctcctacacaaacacaatacaacctcatctaactataatggatttggttcttagt |
2337920 |
T |
|
| Q |
120 |
aacctaataaactcaacaacaattgcactcctttatttcattattcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaag |
219 |
Q |
| |
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| T |
2337921 |
agcctaataaacggcacaactattgcactcctttattt---tattcccctatgtttgattctatttggattctcaaaagttgttcatagcaaaaataaag |
2338017 |
T |
|
| Q |
220 |
aggcgccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagagtcttaggtaccttagctgataa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2338018 |
aggcgccaatagccgaaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatcaccccatagagtcttaggtaccttagctgataa |
2338117 |
T |
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| Q |
320 |
atatggaccattattcaccatcaagcttgg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
2338118 |
atatggaccattattcaccatcaagcttgg |
2338147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 124 - 357
Target Start/End: Original strand, 2348971 - 2349204
Alignment:
| Q |
124 |
taataaactcaacaacaattgcactcctttatttcatta-ttcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaagagg |
222 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| || ||||||||||||| |||||||||||| ||||||||||| ||| ||||||| |||||| | |
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|
| T |
2348971 |
taataaacgccacaacaattgcactccta-atttctctaattcccctatgtttatttctatttggactctcaaaattttctcacagcaaaaacaaagaag |
2349069 |
T |
|
| Q |
223 |
cgccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatagagtcttaggtaccttagctgataaata |
322 |
Q |
| |
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| || ||||| ||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||| ||||| |||||| | |||||||||||||| |
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| T |
2349070 |
cacccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagttttaggtccattagctgataaata |
2349169 |
T |
|
| Q |
323 |
tggaccattattcaccatcaagcttggttataaac |
357 |
Q |
| |
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||||||| ||||||| ||||||||||||| ||||| |
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| T |
2349170 |
tggaccaatattcactatcaagcttggttctaaac |
2349204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 2355807 - 2355849
Alignment:
| Q |
309 |
ttagctgataaatatggaccattattcaccatcaagcttggtt |
351 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||| |
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|
| T |
2355807 |
ttagctgataaatatggacccttgttcaccatcaaacttggtt |
2355849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 2264186 - 2264158
Alignment:
| Q |
236 |
aggtgcatggccaatacttggtcacctct |
264 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
2264186 |
aggtgcatggccaatacttggtcacctct |
2264158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 179 - 350
Target Start/End: Complemental strand, 5806317 - 5806146
Alignment:
| Q |
179 |
tctatttggattctcaaaatttgttcatagcaaaaccaaagaggcgccaatagccgaaggtgcatggccaatacttggtcacctctcactttttagtggc |
278 |
Q |
| |
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||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||| |
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| T |
5806317 |
tctatttggattctctaaatttgctcatagcaaaaacaaagaggcaccaatagccaaaggtgcatggccaatacttggtcacctcccaattttttgtggc |
5806218 |
T |
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| Q |
279 |
acacaatcaccccatagagtcttaggtaccttagctgataaatatggaccattattcaccatcaagcttggt |
350 |
Q |
| |
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|||||| ||||||||||| |||||||| || ||| ||||||| |||||||| |||||||||||||||||||| |
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| T |
5806217 |
acacaagcaccccatagaatcttaggtgccctaggtgataaacatggaccaatattcaccatcaagcttggt |
5806146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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