View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11022_low_24 (Length: 306)
Name: NF11022_low_24
Description: NF11022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11022_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 25683177 - 25683467
Alignment:
| Q |
1 |
atcacgaggttcttgataatagtaggttctaactccagcatatatatgtcaactttatcatcgtgcatggtggcattggagtctctccattaattctcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25683177 |
atcacgaggttcttgataatagtaggttctaactccagcatatatatgtcaactttatcatcgtgcatggtggcattggagtctctccattaattctcat |
25683276 |
T |
|
| Q |
101 |
tcctaactactcaaaattggaggaattttgttttaaacatcaaataagaattttaataaagaaacggagccaagtacaagggt---tagaccatcaaaga |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
25683277 |
tcctaactactcaaaattggaggaattttgttttaaacatcaaataagaattttaataaagaaacggagccaagtacaagggttactagaccatcaaata |
25683376 |
T |
|
| Q |
198 |
gatcnnnnnnntacaaatagtactaaacctgcccaagaaaccaagaacaatatagaacacccgcccaaacaaccctaagactccacatgtt |
288 |
Q |
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| || |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25683377 |
gttcaaaaaaatacaaatagtacaaaacctgcccaagaaaccaagaacaatatagaacacccgaccaaacaaccctaagactccacatgtt |
25683467 |
T |
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